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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaMG_comp27041_c0_seq1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_ubiquitin_conjugation_factor_E4_B_isoform_X2_[Amyelois_transitella]
Ontology
GO:0000151 C ubiquitin ligase complex
GO:0000209 P protein polyubiquitination
GO:0003222 P ventricular trabecula myocardium morphogenesis
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006457 P protein folding
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006513 P protein monoubiquitination
GO:0008626 P granzyme-mediated apoptotic signaling pathway
GO:0009411 P response to UV
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0019899 F enzyme binding
GO:0031175 P neuron projection development
GO:0034450 F ubiquitin-ubiquitin ligase activity
GO:0034976 P response to endoplasmic reticulum stress
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0044257 P cellular protein catabolic process
GO:0051082 F unfolded protein binding
GO:0051117 F ATPase binding
GO:0051865 P protein autoubiquitination
GO:0061630 F ubiquitin protein ligase activity
Transcript
Level		FPKM:8.07 TPM:6.80
ORF EntryO_TrvaMG15770_complete:A_TrvaMG_comp27041_c0_seq1
Sequence
(Nucleotide)
GACTGACTCGTTGTGAGACTGGATGCTTCTTTTTCATGAAGATACTGAAAGAAAAACTAA
CGTAACATTAGATCGAACAAATATATAGAAAAATTGTACTGGATATTCTTCATCATGAGT
GAATTAAGTCAAGAGGAGATACGAAGAAGACGATTAGCTCGACTTGCAGCGCTCAGTAGC
CCAGGTTCTGTGCCTTCGTCAGCCAGTTCTCCAGTGACTCCAGGCGCATCCATCCCTTCT
CCTGAGTTACAGAGTCCTCAACAGACTCCTCGATTATCCCCAGTTCCAGCAACTAGAAGC
TCTACAGAACCCACAACACCAGATACAACAAATGCAGACCAAGAGCCAAATTACTCTGAG
GGAGTCAGATCAGATCAGTCGGATCAGAACAAAATTCCGGCAGACGGATTAATTGTGACA
GAAAAAACTGATAACAATATATTAGATGAAATGCCAGACACAAAGATGACAGATCTTTCA
CAAACAAGACAGTATAGTAGTTTTGATTCAATGGGTGATGATACTTTGTTAAGTTGTGGG
TCAGTGAGAGTGGGGAGTTTGGCACAGAATACTGTTGCTGGGTCAGAAGGGAGTTCTACC
CGAGAGGACAGTACATCTAGATCTATATCTCCACCTCAGTTTGTTGAACCATCACCTGTA
CGACCAAGACAAACAAATGCCTCTCCGAGTTGCTCACGTCGTTCACTGTCTATGGAAGTT
GATGATGTATCAGAAAGAAATTCTCAATCAGAAGCCTTGCAAGAACCAATGGAGATTGAA
GATGATTCATCTGCATCGCCTGCACGTAAAATTCATAGATCTCGCACAGTCAGTTGTACA
GAACTGACAGAAGAACAATTACGTACCATAGTTTCAAAAATTCTTCAAGTGTCATGGTCA
GATGACAGTGCAGGTGGAATTTTTGTGCCATCAGTAGCAGCAGGATTACTTGAAAACCCA
AAGCTTTCCCTTACCGAATTGATATCTGAAGCCTTGTTTGATGTGATTACACAAATAGCT
GATGGTGGTGACCCACTTAGTCAAAAACTTACGGCCATTGTTGAGACAACAAAGAATTTG
AATGAGGAGAACAGTGAAGACCCTTTGTCTATTCCAATGAGTGCAGAGAGTGAGACTGAT
AAAGCAGAATGCCCATCACCAGCTCTTCCAATCCAGAAAACAATGCCATCTCAAGGCTTA
GTCGTTAGTTACTTACTACGGTTCTACAACAATGTTAATTTATATGAAAGAGATCATCCT
AAAAAGAGTTCAGAACCGCCTTTGAGTGACTTACTCCAGAGCTTGAGAACTTTACTAGTC
AATCATTTAGTGCTGGTGTTACAAGGAAAGTTTGAATTAGAAAAGTGTAGGAAATCACCA
TTGTTACCTTACATTTTGATTGGGAATGCACCAACAGGACTCATACCGGAATTGTTACTC
GCAACATATCTTGACAAAGAAGTGTTTGATGAGGTGTTCACATGGTTGGTGCTGGGCGTG
CGCGAGGAGATGCGTCGCGCGCTGAGCACGGGTCACGTGTGCGGCGGCGCGGCGCTGCGG
GCCCTGCACTCGCTGTGCGAGGTGCGCGCCGGGGCCCGGGGCACGCGCCGCCCCGTGTGC
GAGCTCATAGCGCGCCTGCCCTCCTTCTGTCCCGACCCCGTCACCTCGGCGCCGGGACGG
GAGATCGCACGCGTCTCCTTCCTCGGACCGTTCTTTTCTATATCGTTATTTGCTGAAGAA
AATCCACGTTTAGCTGAGCGTCTGTTCTCATCGGGTACAGGCGATCGTAGCCTTGCGTTT
GCGTTGCAAAGAGAAGTAGAAGCAAGTCGCAACACCCTTCACAATATTTGTCACAACATC
CTGGTGTGTCCGGAAGCTAGAGAGCCTTTCCTGAACTATTTCGCGGCCATATTGCAGAGG
AATGAAAGACGCGCACAGCTGCAGACTGACGAACGGACACTTGCCGGCGATGGCTTCATG
CTTAACGTGTGTTCAGTGTTGCAACTGCTCTCCGTCCGCATCAAGTTGGAGCGCGTGTAT
CCGCTGTACACGTTTCAGCCGGACTCGTGGGCGAATGTTCGAGATGAAACAAGACTGTAT
TTTACTGCACAAGAGGCTCAGGACTGGCTCGACGAACTCAATAACGATCCCAATCACAAA
TGGCCCGAGGCGAAGTTCCAGACAGTTTGCTGGTTCTTAACGTTACATATGCACCATGTA
GCACTCATCCCAGCTCTGCACACACACCAAAGACGTATACGTGCCTTCCGCGACCTACAG
AAGGTAATCGAGGAACTAGTGGCCGCGGAACCGCAGTGGAGAAATAGTTTTTCAGCTCTA
CGGAATCGTGAATTACTAAGACGATGGAAAAGACAGATCAAACGTTTGCATAGATCGAAG
CAATGCGCGGAGACGGCCCTGCTGGAGGGCGAGGTGATGCGACGCAGCGTGCAGTTCTAC
TCGTCAGTGTGCGGCCTGCTGTCGCGGCAGCTGGACGCGGCGCGGGAAGAGGGGCCGCGC
GCACTCGCATTCCGCGCCACGCCCGAGTGGTACGTCGAGGACGTCGCCGAGTTCATGCTC
TTCGCTGTGCAATACGTTCCACAAATAGTAGCTGAGTACATCGAGGATCCCATCATAACC
TGGCTACTCAGCGCGATCTGCAACTCTCACCTCATCAAGAATCCGTATCTCGTCGCAAAG
ATTGTTGAAGTTCTGTTCGTTATAAACCTGTCGCTTCCGTTGAAGCTGAAGAACGTATAT
GAAAAGTTCATGGACCATCCGCTGTCGCAGAACGAGCTGCCCAGCGCTCTGATGAAGTTC
TACACGGACATCGAGACCACGGGACAGAGCACAGAGTTCTACGACAAGTTTACTATACGG
TTCCACATCAGTATTATATTGAAGGGAATGTGGGAGAGACCCATACATAAACAGGCAATA
GTAAAGGAATCTCGATCTGGCCGTCAGTTTGTCAAGTTTATTAACATGCTAATGAACGAC
ACTACATTCCTGCTCGATGAATGTCTAACGTACCTGAAGCGCATCCACGAGGCACAAGAG
GGCACGTCGGGCGGAGAGACGCGCGCACGCACACTCGCGCAGGACGAGAGGCAGTGCCGC
TCCTATCTCACACTGGCCAGAGAAACTGTCGATATGTTAGAATACTTGACGGTGGAAATC
AAGGAGCCGTTTCTACGAAGTGAACTGGTCGATCGACTCGCTTCCATGCTCAATTTTAAC
TTGCAACAACTGTGCGGTCCCAAATGTAAAAACCTTAAGGTCCGCCGCCCCGACAAGTAC
GGGTGGGAGCCGCGGCGCTTGTTGAGTCAGCTCGTCGACATCTACCTGCATCTGGACTCG
CCGCAGTTCCACGCCGCACTCGCCGCTGATGAGCGATCGTTCCGGAAAGAGTTGTTCGAT
GAGGCAGCGGTACGGCTCAGTAAATCGTACATAAAGACTCCGTCGGAAATAGAACGATTC
AAGGCGCTCGCAGACAAAGCCTACCAAATTGCTGTATCGAACCAGCAGAAGAGCGATGAA
TTCGCAGACGCCCCAGAAGAGTTCCGGGATCCTCTCATGGACACTCTCATGACTGATCCC
GTCGTTTTACCCTCTGGAAAGGTAATGGACAGGTCGGTGATCTTACGTCATCTACTGAAC
AGCGCTACGGACCCCTTCAACAGACAACCTCTCTCTGAAGACCAACTGCGCCCAGCGACT
GAGCTCAAAGAGAGAATTCATCAATGGCAACGCGAAAAGAAATCAACGTAATCGTCCAAA
GCCAACACTAAAGTCTGATGTATATAACGTTTACATATAAAGACTAGCGGCAGGAGTACT
CCGCCTCTGAGGACTATTGTCCGAGCGTGAATGAAATTATTCAACAACTTTATATTTGTG
CGAATGTTTCGTGAATATCATAAATGATGAATGTATTAGAAAACAACGTAGAATAATCGT
AGCTTTCCTACTTCGATGTTTTAATTCAATTAATATTACGACACAAATAATATAGTAGAT
TTAGACGTTAAAATTTTAGTACATGTGTTAGACTTGTACGTGTAATGATTCCTAAGACGC
GTTCATCGAATCGTAGACTATGAAGCAAGGATTGTCGGTCGAGTTCTGTTAATTTCTAGC
AGCTGCATTTTGGAAATGCGTCTACAAATGATATATTCTACGATCACCTATCGCCATACA
ATGCTGTCTTGACTCTGCCAGTTGTTTTCTTATTTTGAAATAGAATTTTGATCAATCTTA
TAATTAATTTGATTAACTAAATAAGATCTATCAGCTAAAATACTATTCGAAATATGAAAG
TAAATCTGATTACAAAATAAGTATGTGCAATATTCGAATAAATAGACAATTATGTTTATT
TTGCTTCCCGAACTCATTGTTTTATAGTTTAAGATGTTTAATTTGATATAATTTTAAATT
ACGTCACCGAACGCAAGGACGAGGTTTCATTTATGTACGCATGCAGTAAACTGTTACATT
TTTAGAATGTAACATGAACTGATTAATAATATAAATGCATTTTTGTACATAATATAAAGC
GAGAGCTTTACCCTCAAGTTTAGTGTTCAGTCAATTTAGATTTCGTACTGTTTCTTCTAA
ATGTAGGGATATAATTAAATGAGGCCTAATAAATATGGGTGCCATTGGTTGTTTCTTAAG
GTGGTGCTTGTATGAACCCCTCAACAAAAAACAACAAATAATGACAAACCATAGACAAAC
ATTTCATGTATTTTTGTTTAGTGGAGACTAAAACTATAGAAAAACAAAATTTTCTGAAAT
CATGGGCAAAAAAAACGATTTATATCGGATAGTCAACATTAGTTTTAAACTAATGGTTAA
TATACAAATATCAAACATGAAAACTATAAAAAGATGTATGGAATATGAACTAAAGACTAA
TTTGGAGAAAAAGTTAAAATTTTAGGAAAAACATATTTAATTTTACTATTCAATTTATTA
TTTGTATTTAGTGATATTATGTGTAGTATATTTTTAGTAAAAATGATTTTATATTGTTTA
ATTATAGCCT
(5050 bp)

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