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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaMG_comp26996_c1_seq2
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_pre-mRNA-processing_factor_39_isoform_X2_[Amyelois_transitella]
Ontology
GO:0000243 C commitment complex
GO:0000395 P mRNA 5'-splice site recognition
GO:0005634 C nucleus
GO:0005685 C U1 snRNP
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0030627 F pre-mRNA 5'-splice site binding
GO:0071004 C U2-type prespliceosome
Transcript
Level		FPKM:1.35 TPM:1.14
ORF EntryO_TrvaMG15455_complete:A_TrvaMG_comp26996_c1_seq2
Sequence
(Nucleotide)
GAGGTGAGTCATAAGATGATTCATATAAATGATACAATGTTTAAGTCACATGGTGTGTTG
GTAAGGCTTCTACACCAAATTGATGAGTTTTGTTAATCTCTTGAACACTTGGATTTTTGT
AATTTTTGGTCATATATGGTATTTTGCAATTATTTTTTTTCCCAACAGTGCTACGAGGTC
CACGATGTTCGTATACGAAAGACGTCAGGTCACAGCGGAGAGTTGTATTACTATCAAATA
GTTATATTTTTAGTGATACTTATGCTATGGTGTATTGTTTGTATTCTAGTGCTTATATTT
AATACAACTTGTACATGCATGATGTATTGTAATATTTCTAATGTATATTTAACTAAGATC
ATAATGAGTTATGGATATAATTAAGTTGAAACTAATCCATGAAAGCACGTTAGCACGGAT
CGCAGCTGGCCTTCGTATTTAGCCATTTCGAAGATCACGGCGAAGACATCGAGAGGCCGT
CGTCGCACTGAGAACAGGTGTAATATGCCCGAACAAACATTTTATTATAAACAGATAAAG
CGAGATGTTGTGTCCGCGCATTCTTATTCAAGTAGGTGCGACCTCTCGCTTACTCTGTTA
TACAAAATTGAATGAAAATACATTTATTTATATTATAATGCTATTGAATATTCCCTTGCT
ATCATAGTATTGTCGTCCATTTGACAATGCTTTAGCGCTCGCGGAATTATGCTAATATCT
GTTATGTTTGCAGGTATTGGAAAGAGGACTTAAAGCTATACCACTATCCGTAGATCTCTG
GATACATTATCTTAATCATGTAAAGACAACAAGGACGGAAGATCATGCATTCATCAGGTC
ACAGTACGAACGAGCAATAGATGCCTGTGGCCTCGAATTTCGCTCGGATCGTCTTTGGGA
GTCTTACATCAAGTGGGAAGCGGAAAACGGTTCTGCCCTCAATGTTACAAATATCTACGA
TCGTCTTTTAGCAACACCTACATTAGGTTACACTTCACATTTCGACAATTTCCAAGAGCA
CGTGATGTCGGAGCCGGTGTCGGGCGTGGTGTCGAGCGAGGAGCTGATCCGGCTGCGCGG
CGAGGTGCGGGACGCGGTGGGCAGCACGCCCGCGCTCGACCTGCCGCCCGGGGAGGACGA
GCCGCTCGATCACATTGCATCGGAAGAAGAAGCACAAGCCATCAAAGAACGTATAGTTGC
GGCGCGGAGGAAAATACACAAAACTACGGGCGAAGAAGTAGCCTCGCGGTGGACTTACGA
AGAGGGAATAAAACGTCCATATTTCCATGTGAAGCCACTAGAACGTTGTCAATTGAAGAA
TTGGAAAGCATATTTGGAATGGGAGAAACAGCATGGCTCGTTCAAGCGAGCGCTGGTACT
ACACGAGAGATGCCTTATTGCGTGTGCCTTATATGAAGAGTTTTGGATGAAGCTTATAAA
GTTCCTGGAAGAGCGCGCCGAACAAGATCCCGAAGCGATAGCTATAGGGCGCGAGGTGTT
CGAGCGAGCGTGTACCGTGCACCATCTAGACAAGCCCGAGCTACATCTGCACTGGGCGCA
CTTCGAGGAAGTACAAGGGAATACAGCCAAAGCAGCTGAAATCCTTGATCGTATAGAGAA
AACCTGTCCCAATCTTGTTCAAATACAGTATAGACGAGTGAACCTCGAGCGGCGTCGCGG
CGATTATGACAAGTGTTCCCAACTATACGAAACCTACATCGCCGGCGCCAAGAACAAGTC
GATAGCCTCGGCCCTGGCTATCAAATACGCACGTTTCCTGCAACACGTGCGGCAACAGCA
CGCCGCCGCCCGCACTGTGCTCGACGAGGCTATCACTAAAGACCCGCTCAACTCGAGACT
GCACTTGCAGAGACTAGACCTCGCTATCAACACACCTGGAATTGCTTATGAAGAATTGGA
TGAGCTGGCTCAGTCGTACGGCAAGCAGGAAGGCGCGGACCCGGAGGAGAGCGCTCGCAT
GGCGGCGCGACGACGCGACCTCGCCGAGGAGCTCGGGGACGCCGCGCACGCTCGACTGGC
ACACGCACACGCGCGGTCGCTCGCCAAACATCTACGCAAGCGGACGCGCAAAGAGAAACA
CGACCCGCCGCCGCCACCCGCATCCACGGAGGTAAAAAAGAAGGAGAGCGCCACGACAGG
AAGCAACACCGTGGCTACAACGAGCGCCAACTACTACGCACCAGCAGGAAGCGCGCCCAC
ATACGAGCAGTCATACACGCAGCCCTACCAGCCGCCCTGGGGATACCAGCAGCCACCCGG
ACCCTACCAGCATCACCCGCACGCCTGGCCGCAGTACCCCAACTACTACTAGACTACATA
TACAACCGTACAAGACATGCTTGCAAATATAACAATATTTACTGTATTCATTAATTTTAT
TAGTCCATGTTTTAAGAGTCTTTAAAAACTTTAAAATAGCGAATTAAAATCTTATATCCA
AGATTTTATAAAAGTTATAATATAGCAGTGATTGTTATCAATATTGACAAAATTTAAGTT
TTGAATTATATTTTACAAATCATAAAAATTACAAAGCTTAATTTCCAGTAGTACAATTTT
T
(2581 bp)

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