SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaMG_comp26990_c0_seq2
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_chromodomain-helicase-DNA-binding_protein_Mi-2_homolog_isoform_X2_[Amyelois_transitella]
Ontology
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0003682 F chromatin binding
GO:0004003 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007283 P spermatogenesis
GO:0007517 P muscle organ development
GO:0008026 F helicase activity
GO:0008270 F zinc ion binding
GO:0016581 C NuRD complex
GO:0016787 F hydrolase activity
GO:0016818 F hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0016887 F ATP hydrolysis activity
GO:0031491 F nucleosome binding
GO:0032508 P DNA duplex unwinding
GO:0035327 C euchromatin
GO:0042766 P nucleosome mobilization
GO:0043044 P chromatin remodeling
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0048813 P dendrite morphogenesis
GO:0051276 P chromosome organization
GO:0051312 P chromosome decondensation
GO:0070615 F ATP-dependent chromatin remodeler activity
GO:0071923 P negative regulation of cohesin loading
Transcript
Level		FPKM:8.56 TPM:7.20
ORF EntryO_TrvaMG15431_complete:A_TrvaMG_comp26990_c0_seq2
Sequence
(Nucleotide)
TTTCAGTTATCAATTTTTGGTAAATTAAAAATAAAGATTTCATAAGTCCACAATTATCCA
CTTACACGATAGAAAAGATTCATACAGATCAAGATGAAATAAATAATATTGTGATTAATT
TCTTCATAATGACGTCAAGTTATCTAACGGAGCTAATACTAAGTAATTATTTATTATCAC
TTCGGAGCCGATGTGGAAACAGGAATCTTCAAAAAAGCTTACATCTAATTCACCTACGCG
GGGACACGTCCGCTCGCTGCGGCTATGTCGAATCGAATATATTATTATAAATTACGGAGC
TTATGATTTATTAGAATTCGAGGATGAAGTAGGCTGTCCGGGCACGGAGTACTGCGGCCG
GAAGTTGGAGAAGTTGGCGGCCGTCGCAGCCGACGCCGCGAACCCGGGCAGCGACCCGCC
CGTCTGGAACCCGCTCGGGAACTGCGCCATTTGAGCTGCGGGCACGGGGTTGCCGGCGGT
GGCTGCGAGTCGCGAGAGGATGGACCGCTCCGACATCTGCAGGCGTTGTGCGACGGGCGG
GATGCGCGCCAGCGTGGCGGGGAGCCGGGACACGTCGGACTTCATGTCCGATAGCAGCTC
CTCCAGCTGGTTCAACACCTTATGCAAGACCGCATTGGCGGGTTTGTTCCCTGCGAGCGA
CTCCTTGCTGAGGTGTTGGTGCGACTCGGCGAGGCACTCCACCTCGGCGAAGCGCGCGTT
GAGCGACATGGCGGGGTGGTTGGGATCCTGCGTGAGGTTGAGGTAGGCCGCGCGACGGAG
CTGCTCTTCGATCACTAACGCTTGCTCTAGTAGCTTAAAACGACGAGCCAAGAATTTATT
CTTGATCTCAAGGAAGTTTCCTTTGCCGACGTCCATCTTAAACGGCTCGTTAATGATGGC
AAAGCGCAGGTCATTCTGTATATCTTGCCAGCGACCGTAACCGTGCGTGACTATGCCCGC
TAGAAGCCAGTAATCGTGCCTTCTGTGCCATATTTCATACTCTCTGCCGGGCGCGGCTGC
TCGTTCTTCGTTGAGCCATAGAGTATGGAGCTCAGTGAACCCTCCGTCGGCGATGTTGAA
CATGAACTTGCGACGCTCCACTTTGAGATCTTCCTCTTCTTTGACTAAGACAACGTCGTC
ATCATCGTCATCCTTTTTCTCATCCTTAGGTTTTTCGGACACATCAGACCCAGTCTTCTC
GCTCTTAACGTCGTCTTTCTTATCAGGATCTTCCTTTACTTCCTCTTTAACTTTAGGAGA
CTCCTTCTCGTCCTTCTTCTCTTCACTCTTCTCATCATCCTTGGGAGGCTCCTCGTCCAC
CGACATGCGTCTTTCCGGGTCTTTCTCTTCCTCTTTAGGTGAACCTTTTTCTTCAACGCT
ATCTTCTTTGCCCTCGGTGGTGTCCATTGGTTCCGATTTAAGTTTATCTTTAACATCAGC
CTTGTCGTCTTTTGTTTCCTCTTTGTCGTCTTTGTCCGATCCGGCGGGCGTGGCCTGGCC
GTGCGCGAGGAGGGTGGGCGCGGGGGAGGGGGCGGCGGAGGTTATAGGAGTAGCGGTGGA
CGGCGCAGGGCTGGGCGCCGCACTCTCGCTGGCTCCCGACACCTTCACCGGCTCGACTGG
CTTCCGAACCAACTCCGGCATACTGTAGTACCCGTTGATGTGTTCGAATTCTTGCACTTT
CTTCCTGATTAGACTCATCACACCGATTCGAGTTAGCACGTGCTGACGAGATAGACCTTC
TCTTGGAACGCCGTCTGCAAATGTCTCAGCGTTATCAGCCCCTGGTTCGCAAAGATGCCG
CATGAATAAGGAAACGTAAGCCTTGAAGTTGCGTTCTGATTTGCCACGTAAGTCCCTCAC
TAACCATTGCGAGTTGAAAGCGTCCTGCGGTGGCATGCCGTACCGCATGATCGCATTGAG
GAATGACTTTCTTTGTCTAGCATTGAATCCAAGGACTTCCATGTTTCCTCCAACTCTGGC
CAGTAGGGGTGGTAATGGCCGATCGCGTTCCTCCCGTTTCTCGAGGCGTCGCTTGCTTCG
GCGGCTGAGCAAATCTCCGTTGTCGTTCTTTTCATCGAAGTCGTCATCCTCTTTATCGTC
TTCGCTACCTTGAGAGAAGTCTGAATTGTAATCTGATCCATTCTCTTGCCAGGTGGAATC
CTCTCTGTTTTCAGTTTGAGCAACACTGCCGTCATTGTAGTTGACTTGTTTACGAACTCG
CTTTCCTTTACCGAGCGTTCGCGCTTGATCTTCTTGATGTTGTTCATAATGATGCCTAAG
AAGTTTGATCCAGTACGCCGGGTCAGTGTTCTCTGCTTCTTGCTTAATAATCTCTGTATC
AACTTCTTCTTCTCCGTCGCCTTCCTTGGTGGAGTAACTTGCAACTTTGAAGGAGCTAAG
ATATTCATTAGCCCAAGATTCCTTCTGTTCTATACCTTCCTTGGATCGATCAAGCAATTC
ACCGACAGCTTTATCGTCATAATGAATAGCTTCCTCTTTGCCTTCATCTTCTTTGAACAA
CTCTTCTGTGCCGAACCGTAGAATATCATCCAACTCTTGCTTAGTGAAGTTAGCTCCCTT
GCCTCCCATACCGGGTCGTACCACTAAATGTGTCAACATCATTTTTCGTTTGGCGACTTG
AGTAACCCTTTCCTCCACACTGTTACGTGTGACGAAACGATATATCATAACTTTATTGGC
TTGACCGATACGATGGGCTCGGGAGAAAGCTTGGATGTCGTTGTGAGGATTCCAATCTGA
ATCATAAATGATGACAGTGTCGGCGGTGGCCAAGTTGATACCTAAACCTCCTGCTCTTGT
GGATAAGAGGAAAACAAATTGCTGAGCACCGGGAGCATTGAATCTATCTATAGCTTCCTG
ACGAATAGTTCCCGTGATACCTCCGTCAATTCTCTCATACTTGTATCCTTCGCCTTCCAA
GAAATCTTCAAGGATGTCCAACATTTTCGTCATCTGCGAGAAAATCAGTACTCTATGGCC
CTGCTCTTTCAATTGCTTTAACATTTTAGCGAGAAGAACCAGTTTCCCAGAGGCTTTAAT
TAAAGCCTGTGTATCGTAATTTCCATGCGGACCTAACGGAGCTTCTTCAGCTGCGACAGG
GAACAAGTAAGGGTGGTTACAACACTTCTTTAGATCCATCATAACGTTGAGTAGCGAGAC
AGTTTGGCCTCCGCTCTTGGGATTCAAAGCTTCATAATTCCTAGTAAGGATGTACTTGTA
ATATTTCTTTTGCATGGGAGATAGCTCCACACGCACAATAAACTCAGACTTGGTGGGCAT
GTTTTTGAGCACGTCAGCTTTCAAACGCCGCAGCATGTGCGGTCCTAACATTTCGTGAAG
CCTCTTCACTTGTTCCTCTTTCGAGACATCGGCGAACTCATTCTGGAACGCCGCGAGATC
ATTGAACTTATCTTTGTTCAAGAAGTTCAAGAGATGGAACAACTCTTCCAAGTTGTTCTG
TAGTGGAGTACCAGTTAAAAGTAGCTTGTAATTAATATGATAACCAGCTAAAAGCCTAAA
GAACTTCGACTGATTACTCTTCAGTCTGTGAGCTTCGTCTACAACGAGGACAGCCCAGTC
AATAGATCCTAAACAAGTTGCATCAATTGAGATCAATTCATAGGAAGTAAGTAAAACATT
GAATTTTACTTGCGACTTAATTTTAGAAGGTCTACCGCCTCTGTTAGCACCGTCGTCAAA
TGTCAATTCGTTCTCTCTGATCACAGCCCTTGAGTCTTTGTCACCTACATAAGTAATACA
GTACAGATCCGGTGCCCAGAGTTCGAATTCTCTCTCCCAGTTAATGATTGTGGACAGCGG
CACAGACACCAGGAATGGCCCCTTGCAATGCCCTTCCTTGAAGAGAGAGTACAGGAATGT
AACAGTTTGTATAGTTTTACCGAGACCCATCTCGTCAGCCAAGATGGTGTCAATGCCTTG
ACCCCAGGAGTACCGGAGCCAGTTGAGACCTTCCAACTGGTATGGATGCAGTTGCATGCC
AGTCTCGTATACGAATGGTGGTTGATCTTCGTATTTTTTATTAAGATTACTGGTGGGTCG
TTCCGGCGGTGGGTTGTATTTCTTGGGACGCATTTGTAGGCCAGCGCTGCTGTCATCCTC
GTCAGTGATATCCTTGTTCTTGCTCTTGCGTCCTGGTTTCTTACCTTTCGAGCCTTTAGT
TTTACCATCGGATGTTATGAACGCGCGCATGTCTTGATAATATTCAATGGCCTGTTTCAA
TCCAGCAATATCTTCATGTTCTGATTCCCAAGTGGCCTGATCGTATGATAGATCGCGCCA
TTTAACTAAAAAGTACGTCGTGCCGTCTCTTGAGGTACGATGATTGATCACGCGATGTAC
GACCAACCATTCTGGTTTGACACCATATCTATAATACTTCTCCTCGAGCAACTTCTCGTT
ATTAGCCTCTGAGTCGTGTTGTTTGTCCTTGAGTCGCTTGTACCGGCTGTCGCGCTCGTC
GAGCGGCTCCTCCAGCTTGGGCGGCTCCTCGGGGTCCGACTTGCGCATGTAGTACCGGTA
CATCAGGGGGTGGAATACGTCCAACTGCAATTCAGATATCCAGCTGCAGTGCCAGTAAGA
TCGTTCATGCCACTTCACAAAGAACTCTCTGGAACGTGGAGCCTTTGACTTGGCGGAGTG
TTCCTTCCATCGCCATGTTAAAATCTTCGCCACTTTACCATCCAATGGTGGACAACTGCA
TCGAGGGCACTTCCAGTCTCCGTCCGGTACCTCATCGAGCGGCGGGTTCAGACAGAAGCG
ATGGTAGGCGGACGGACAAGAGTCGCAGCACAACAGCTCGCCGCCGTCTTTACATATTCT
GCAGAACTCCTGATGTTCGTCATCATCATCGTTGTCGGGCGCGGGTTCGGCCTCGCAGTG
CGGACAGGACCAGCGTCCCTCGGGCGTCTCCTCGAGCTCGGGGTCGAGACACACGAGATG
GTAGGCGCGCGGACACGTGTCGCACAGGATTATCTCGCCGCCTTGTTGACATACCTCACA
ATAATCCTGGTGTTCATGTTCACCCTCAGCTCCGTCAGGAAACTTACTTGTTGTCTTCAA
CTTCCTTTTCTTCTTAGATTTATTACCTATTTTTGTCTTTGCCTTCTTTTTGGGTACCGT
GACATTAGGATCATCCTCTTTAGGCGGTGCGGCGTCCTCGGCGGCGGGCGCGGCGGGAGG
TTTGGTCTCCTCGGCTTCGGCCAACATTTGCTCAAACTCTGCATCTGAGTCTGAATTCAC
GGCGCTGCCTTCGTGTTCTTCTTCACTGCTTGTTCGTTTCCGTTTGCTGAACTTGATCTT
GAGCGTGGGCACTTTAGGTTTCCGTCCCGGCTTCCCCCGCGGCGTGGTGGCGGCGGCCGC
GTTCTTGGGTTTGCGTCCACGTTTGCGAGGCATAGTGGCGCCTTCGTCACTCGCTTCCTC
TTCCTCTTCTTCTTCCGGCTCTTCTATTGTTTCGTCGTTCTTAGTCTCTTTAGGCGTGCG
ACCCGGTCTCTTAGGAACGTAGTCAGAGGTGGTTGAAGTGTTTGTGTTCTCCTCGGAGCC
CATGCTTTGAGGTACAGCGGTGTTTAGGTGTGGATTCGTTTCACAGAACATACGCCATTT
CGCGGCGACTAGCATCATTAGTTTTGACACTGGCACCTTCGGGTTTTCTTTGACGAGCAT
CGGCCGTACATGCTGTTGGAACAGTTTGTATGTGGTCAAGTTTTCATAGTCTGCGTCTAC
GTACTGTATGTCTACGTCTGTGAGACCGAATGACGAGCACACCTCCTCCACTGTTGGCAT
ACCGCAGCCAGAATCAGATGCAGCAGGTGTTGACGGTGTGTTGTGTTTGCTGCTGCGACC
CTTACGAGACTTCTTGCTCGAGGATACCGCACTCAGTGCGTAGTCACTGTCACCTTCAGC
CTCCATTTCCAGGCCAAAGTCATCATCATCTTCACTTTCATTCTTTCGCTTCTTCTTTTT
CTTTCTTCCTTTTTTCTCTTCTCCTCTGGCTTTCCTTTTCTTTCCCTTTTTCTTTTTACG
GCCATCTTCTGGGGAATAATCTTCATCTTCCTTTGGTGGGGCTTCATCACTGTCTCCAGA
ATTATCATTTTGACCCTCACCTTCTTCCACTTCCTCGTCACCTGCAAAAGAACCGTCTAC
TTCCTCATCTGATGCCATTTAGATCTCTGTTGAACACAATCTGTATTGAAAAGATAGATT
TTTGTGTAGAAAAGATAAAGGACGCGCAGTTTTTGCGACAAATTGTAATTAATTCAGAAA
TTGATGCCG
(6309 bp)

- SilkBase 1999-2023 -