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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaMG_comp26958_c0_seq3
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_putative_U5_small_nuclear_ribonucleoprotein_200_kDa_helicase_[Papilio_xuthus]
Ontology
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003724 F RNA helicase activity
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0007067 P mitotic cell cycle
GO:0007419 P ventral cord development
GO:0008380 P RNA splicing
GO:0016787 F hydrolase activity
GO:0030532 C small nuclear ribonucleoprotein complex
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:6.06 TPM:5.10
ORF EntryO_TrvaMG15252_3prime_partial:A_TrvaMG_comp26958_c0_seq3
Sequence
(Nucleotide)
GAAAAATGGCGTCGGCGACATAACCTCAAAAGCGTTGTTTTTATTCCGAAGTTTGTGTTT
GTTGTAGAGAAAAATAACGACAAATTAAATAAGGAATTGCTTGTGTTTATTTAATTTAGT
GAACCATGGCTGACGCGGCTGCCAGACAGTTACAGTACGAGTACAAGGCGAACTCGAACC
TTGTACTGCAAGCCGATGTTCGTCTGATAGAAAGACGAGGTCGAGACGAGGCGACGGGCG
AGGTCCTCTCTCTATCCGGGAAGCTAATTGGGACCCGGATGGGAGATCGAGCTCAACGGA
CTAAGCCGGATAAAGCTGAGGAGAGGAAGGCTAAACGTCAAAAACGAGACGAAGCATCCT
ATGAGCTTTCTAAATCGAAGTCAAGCCGCGTTGCTTGGGCAGACGACGCTCCCGGTGTAT
TATATAGACCGAGAGCCCAGCACACGAGGCACACGTACGAACTACTGTTAGCATTCATGC
AGAGTTCTTTGGGAGATCAACCGAGGGATATATTGTGTGGGGCTTGTGATGAGGTACTCC
TAGTTCTAAAGAATGATAAATTAAAAGATCTAGAGAAGAAGAAGGAGATTGAGATGCTGC
TTGGAACCATAGCTGATGAAAGATTCGCTCTGTTAGTCAACTTGGGTAAAAAGATAACGG
ACTTCAACATGGCGGCCGCTTCTGAAGGTAACACGGAGATAGATGAGACGTACGGCATTA
ATGTGCAATTTGAAGAATCTTCTGAGGAAGATGATGAAGACGCTTATGGCGAGGTAAGAG
AAGAAGAAAGAGATGATGCTGAAGGTAGTGAGAATGAGAAAGAGAAGGAATCGAGTGGAG
AGGAAGACAGCGACGCTGAAGCAAAGAAAAACGCTATACATACTAATTTAAGTGAAGAAC
AAGCACACAAACGTCATTCTCAAACTCTTCATCCGATGGATATCGACGCGTATTGGCTGC
AAAGGAGATTGTCTCGACACTTCCCAGACGCCATGCTGTCACAGGCAAAATCCAGTGAAG
TGCTTAAAGCTTTAGCCGAAGCTGCCGATGACAGAGACCTCGAGAATAGACTAGTATTGT
TGCTCGGATACGACTGCTTTGATTTCGTCAAGATATTGAACAAGTATAGGTTTATAATAT
TATACTGCACAAAATTGGCTTCGTCTCAGTCTGAAAGTGAACGAACTTCCATCAGAGATG
AGATGTCAAGACAACCTCATCTTCAGAAGATCTTGGCTCAACTGGAAACCGGCAATGGAG
ATGATGAGAAAACAGACACCCATTCGGAAGCCCCCCGCAAGAAGCACAAGTCAGACCCTG
ATCTGGCCGAAGGTTCCGGTCAGGTCTCCGGGGCGAGGAAGGCGGTTCATCTTGAGGAGT
TGGTGTTCGCGGCCGGGTCGCACTTCATGGCCAACAAGCGCTGTCAGCTACCACCAGGAT
CCTTCAGGAAGCAGCGGAAAGGTTACGAAGAGGTTCACGTCCCAGCTTTGAAACCGAAAC
CGTTTGAGGAGAACGAGACTCTGACGCCGATTGAGAAACTACCCAAATACGTCCAGCCCG
CGTTCGAGGGGTTCAAAACGTTGAATAGGATACAGAGCCGCATATGCAAGCCCGCATTAG
AGACGGATGAGAACCTCCTAGTGTGCGCTCCCACGGGCGCCGGTAAAACTAACGTAGCTC
TACTATGTATATTACGAGAGGTCGGGAAACATGTCAACGAAGACGGAACTGTAAATGTCA
ATGATTTTAAAATGATATATGTGGCGCCTATGAGGTCACTTGTACAAGAAATGGTAGGAA
ACTTCAGTAAAAGACTATCAGTCTACAATATGAAGGTCTCTGAGTTGACCGGAGACCACC
AACTGACCAGAGAGCAGATAGAAGCGACACAACTTATTGTATGTACTCCGGAGAAATGGG
ATATTATTACTAGGAAGGGCGGCGAACGTTCGTTCACGAATCTTGTTCGTCTGATCATAA
TAGATGAGGTACATTTGTTACACGACGAGCGCGGGCCGGTGTTGGAGGCGCTCGTCGCCA
GGACCCTTAGAACTGTCGAACAAACCAGGGAGGAGGTGCGTTTAGTTGGTTTATCGGCTA
CTTTACCGAACTACACGGATGTGGCGACGTTTCTTCGTGTTCGACCCGAAAAAGGATTGT
TTTACTTTGACAATTCATTCAGACCCGTAGCATTAGAACAACAATATATAGGCGTTACAG
AGAAAAAAGCGCTCAAAAGATTTCAAGTAATGAACGATATTGTCTATGAAAAGATTATGG
AGCACGCCGGCAAGAATCAGATTTTGGTGTTCGTTCATTCTCGTAAAGAGACAGGGAAAA
CCGCGCGCGCTATTAGAGATATGTGCTTAGAAAAGGATACGCTCGGACATTTCTTAAGAG
AAGGCTCAGCCAGTATGGAAGTTCTAAGAACGGAAGCGGAACAAGTCAAGAACCCTGAAC
TCAGAGAGCTACTTCCGTACAGCTTCGCTATACATCACGCGGGGATGAGCCGTGTTGATA
GGACGCTCGTCGAAGACTTGTTCGCTGATCGACATATACAGGTGCTAGTATCGACTGCTA
CTTTAGCATGGGGTGTGAACCTGCCGGCCCACACCGTCATCGTCAAGGGCACCCAGGTGT
ACTGCCCCGAGAAGGGTCGCTGGACGGAGCTGGGCGCGCTGGATGTGCTGCAGATGTTGG
GCAGAGCTGGACGACCGCAGTACGATACTAAGGGCGAGGGTATCCTAATAACGAATCACT
CCGAACTCCAATACTATTTATCTCTGCTGAACCAACAACTGCCCATCGAATCGCAGTTGA
TCAGTAAACTGCCTGATATGCTCAACGCTGAGATAGTGCTCGGATCTGTACAGAGCGTAA
GGGATGCTGTCACGTGGCTGGGCTACACATATCTCTACATTCGTATGCTGAGACAGCCCG
CGTTATACGGGGTGTCCCCTGATAAAATGCAAGAAGATAATCTGTTGGAGTTGCATAGAG
CTGACTTAGTTCACACCGCTGCAAGTTTGTTGGACAAAGCCGGCCTAATAAAATATGAAA
AGAAATCCGGCCACTTCCAACCCACGGAATTGGGACGCATCGCCTCACACTTCTACTGTA
CATATGAAACCATGCAATCATACAATCAGCTGCTCAAACCGACGCTAGGAGAGATTGAGC
TGTTTAGGGTATTCTCTCTGTCGGCAGAGTTCAAACATATTGCTGTCAGGGAGGAGGAGA
AACTTGAGCTACATAAGTTGATGGAGAGGGTCCCTATACCAATAAAAGAAAGCATAGAAG
AGCCGTCAGCCAAGATCAACGTGTTGTTGCAAGCGTACATATCGCAGCTGAAGCTGGAAG
GGTTCGCCCTGATGTCGGACATGGTGTACGTGACGCAGTCCGCCTGCAGGCTGCTCAGGG
CGATATTTGAGATCGTGCTCTACAGGGGTTGGGCGCAGTTGGTCGACAAAACGTTGGCCC
TATGCAAGATGGTCGATCGTCGTATGTGGCAGTCCATGTCTCCTTTAAGACAATTCAAAA
AAATGCCTGAAGAGGTCATAAAAAAACTGGAAAAGAAGAACTTCCCCTGGGAGAAGCTTT
ACGAATTGGGCCCCAACGAAATAGGGGAGCTAGTTCGGGCCCCAAAATTGGGCAAAATGT
TACACAAATATGTCCACCAATTCCCCAAATTGGAGCTGGCAACCCACATACAACCTATAA
CAAGATCGACCTTAAGAGTTGAATTGACCATCACACCGGACTTCCATTGGGATGAGAAGA
TCCACGGCCAATCGGAAGCTTTCTGGATATTAGTTGAAGACGTAGACTCGGAAGTCATTC
TTCACCACGAGTATTTCTTGCTGAAGCAGAAGTATTGTAAAGACGAGCATCAAGTGAAGC
TATTCGTGCCGGTTTTCGAGCCGTTGCCGCCGCAGTACTTCCTGAGAGTTGTGTCTGATA
GATGGATAGCAGCAGAAACTCAACTGCCAGTGTCATTCAGACATCTAATACTACCAGAGA
AGAATCTTCCCCCAACAGAATTGTTAGACCTACAGCCGCTGCCTATATCGGCGCTCCGGA
ACGCGAAGTACGAGGAGCTTTACAACGAGACGTTCCCGCAGTTCAACCCGGTGCAGACGC
AGGTGTTCAACGCGGTCTACAACACGGACGATAACGTGTTCGTGGGCGCGCCTTCCGGTT
CCGGTAAGACGTTGATAGCGGAGCTGGCGTTGCTCCGGATGTTGTCGCACAACCCGACCG
GAAGGGCGGTGTACCTCGTACCGAAGGACGCGCTCGCCGACCTCGTATTCGCGCACACCT
ACCATAAGTACGGGACCAACTTTAATTTGAAGGTAGTGCAATTAACAGGAGAAACAGCGA
CGGATCACAAACTATTGAATAAAGGACAAATTATAATAACAACAGCCGATAAATGGGATA
TACTGTCGAGAAGATGGAAAGTCCGTAAAAGCGTTCAAAGCGTCTCTCTTCTCATAGTGG
ACGCTCTCCAGCTGTTGGGAGGAGAGGAAGGACCGGTCCTAGAAGTCGTTTGCTCGAGAA
TGAGATACATAGCTTCACAGACCGGTAAACCTATACGTATAGTAGCCTTATCTTTGCCCC
TGGCTGATGCCCGCGATGTTGCCCAATGGTTGGGATGCAACGCCAACGCTACCTTCAATT
TCCATCCCAGCGTTCGACCTTTGCCCTTGGAACTACATATACAAGGCTTCAACATATCGC
ACGCCCCGACCCGACTAGCTGCCATGACGAAGCCGATATTCAACGCGATACGTCGTCACG
CTGGAACACGCCCCTGTGCAGTGTTCGTTGGCTCGAGGCGGGCCGCTCGCCTGCTGGCCG
CGGATTTGTTAGCCCTGGCCGCCGCTCGGGCCACGCCCACCGCCTTTTTACATGCGACCC
GCGAGTTGTTGACACCGTTCTTGGATACTGTGCAGGATAAGATGTTAAAAGAAACTCTCT
CGGCGGGCGTAGCGTATCTGCACGCGGGCGTGTCCTCCGCGGACCGGCGCGTAGTTCAGC
AGCTGGTGGAGTGCGGCGCCGCGCAGCTGTGCGTAGTCGCGGCGGAGCTCGCGTGGAGCT
TGGCGGCGCACGTGCACACCGTCATCATAGCCGACACTTGCACGTACAACGGCAAGATGC
ACTCGTACGAGCAGTACCCCATAACGACGGTGCTGCAGATGATAGGCCGCGCCTGCAGAC
CGCTCGAAGACGACCATTCCGTCGCCGTCTTAATGTGCGCTTCTCATCACAAGACGTTCT
TTACTAAGTTGTTGAACGACTGTTTGCCGCTTGAGAGCCATTTGGACCACAGACTTCACG
ATCATATGAATGCGGAAATAGTTACCAAAACCATAGAGAACAAACAGGATGCAGTCGATT
ATCTAACGTGGACCTTCGTCTATCGCCGGTTAACACAGAACCCGAACTATTACAATCTAC
AGGGTGTTACGCACAGACATCTATCGGACCACCTCTCAGAGCTAGTCGAGAGCACACTGA
CAGATCTCGAGCAATCGAAGTGCATAGCGATC
(5552 bp)

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