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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaMG_comp26916_c1_seq1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_lysine-specific_demethylase_lid_isoform_X2_[Bombyx_mori]
Ontology
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006325 P chromatin organization
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0007526 P larval somatic muscle development
GO:0008270 F zinc ion binding
GO:0016491 F oxidoreductase activity
GO:0016568 P chromatin organization
GO:0016577 P histone demethylation
GO:0016706 F 2-oxoglutarate-dependent dioxygenase activity
GO:0032453 F histone H3-methyl-lysine-4 demethylase activity
GO:0032922 P circadian regulation of gene expression
GO:0034647 F histone H3-tri/di/monomethyl-lysine-4 demethylase activity
GO:0034720 P histone H3-K4 demethylation
GO:0034721 P histone H3-K4 demethylation, trimethyl-H3-K4-specific
GO:0043970 P histone H3-K9 acetylation
GO:0043992 F histone acetyltransferase activity (H3-K9 specific)
GO:0045475 P locomotor rhythm
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0048511 P rhythmic process
GO:0051213 F dioxygenase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0070822 C Sin3-type complex
Transcript
Level		FPKM:5.21 TPM:4.38
ORF EntryO_TrvaMG14844_complete:A_TrvaMG_comp26916_c1_seq1
Sequence
(Nucleotide)
AGTGGGCAGTAATGGGTTGTTACTTGTTGTATTAATGTGTTTCGTCCCGTTTCTGCGCGC
AAGTCCCGCACACGTAGTCGTCGTCCTCTCGGAGAGCGCCGCGGCTGAGCCCGACGCAGT
GCATGTGGAACCACTGGTCGCAGCCTCCGTCGCATTGGACCCAGTCCACTTTGCCAGTAG
GCCTGAGACAGTTGGTGGCGGCGCAGTCTTCATCATCATCAGCTGAGGACATCGATGATG
AACTGCTCCGTCGGCTGGCGGCTATAGCTCGGCTTCCTGTGCCTTGTGATGATGAGTCAC
CTCGTGATGAGTGTTTTCCCCGTGCGGCAGCAAGACCACGTTTCCTTCGTTCCTGTCGCG
CCATGTAATGTTTCCTCATCATTAAACTGGATCCGGAAGATACACCTTGTTTTCTGTTGA
GATAATTAGTGGTCGTGGCCGAACCACGTTTGATTGAGGTCTTCGTTACTGTGGGTCCGT
GATGATGCCTGGTCCTGGTCCGTTTGAGCTGATGATGGTGTCGTTGTTGCCGCTGTCGCT
TCCTCCTGCCCGCGTCCAGCACGCGCGTCGCCTTGCGTCCCTCGGCGGCGCGCGCACACC
ACACCGCTGACCACACTTGGGACTGTTCTTCTAGACGAACCTCCAACAAATCTCCTTCCA
GCATCAACTCTTCCAGTTTATGTAGCATGCCGGGCGCCATTCTCGCGTTCGGCGATCGAG
GAGTCGCGCTGTACGCGTGCTCTACGCTTGCTGACGACCTTGCATTCTGTGAAGTATTAT
GTACATCGTGAGCTCTGCCGGTCGCTTTCTTCAGTTCAGCGTTTAATTTGTCCGCTTTTT
CTCTGTTTGTCATATCAGCCCTATGCGGTAAGGCCGTGAGTAGCGCCCGTGCATTGTCTT
GCCACGACATGGCGCGTTCCGTCACACATTGTAGAGCTTCTCCTTCGGCTAAACGAACCG
GTAACTTTTGTAGCCATACCAACAACCCAAGAATTCTATCAAGTCTTGGTCGTTTTGTCC
TCATACAGTCAGGACAGAGGAACTTGCTCTCAGCGCCCGAAAACGGAACGCTGTCCCCGC
GATCCGGAGAATCTTCTCGTTCGTCCTTCATTGATGATATGCAGGAGGCATGGAACCAGT
CCTTGCACAGTTCACATTGCGTCATGACTCCGTACTGTCGTTTTTGACAAACACAAAACG
TGACGCCGGCGGTGGGGGGCGCTCGCACTTCTTTACGCATATTGCGGGCTCTAACACTCT
TCATAGTATTCAGCTCATTGATCTCGGCCTGTTTGAACGCGGCGACTATCTCAGTAGGAG
TGGAGTCCTCGCTGAAGTTCCTCAGGAATATGCCCGCCTCCACCGAGGAGGGCGCCGGGT
CGGGGTGCGCGGGGCGCGGGCGGCGGCGGGGGGCGTCCGCGCTGTCCGTGCGGGGGGAGA
GGGCTTCTAGTAAAGAGTAAGGCCAGTTCTTCTTCAAAAACATTTCAGCGGCGCCTTTCT
TCCATTCCTTAGCAGATTGCAAGGCAGCTGCTAGTTGATCCTTCTCGTACAAAGCTAGCG
GGATCTGTTGACCGCGACGTACGATTGTCTCGACGCTGTGCATGTATGGATAGAGATCTT
TCGATTGCATTTCTTCTACCTTAGATAACCAGTCTTTAGCATGATTCACAGCCGTCTGCA
AAACGTGATAGGACGGTAAAGCGGCTTCTATTTCGTCGCCATCGGCCAATAGCAGATTGA
GTTCAGCTAGAGTAGTGTATTGAGGTTCATCTGACTCAGTTTCTTTGGATTTAGTCGTGT
CTATCAAAACTGCTTTGGCACGCTCTTCCCATTCTTCTATTAATACTTTCAGCTTATAAA
GTCCAGCCCTCTCCAGTTCAACCCTGCGATGCGGCACTAATTTCTCAGAGTCCAGTAATA
ACCTCTCGATGACTTCAAGGGTTAAGTTGGAACATTCGTCTCTGTATTGTTGTACTTCTT
CAATGAAGTTCACTTGTTGAAGTCTTGCTTGTAATGGCGCTAGTTGTGGTAGGACTATGC
ATAGACGCGAGCCTAAGTCTACGACCTCTTCTAATTCTCTGACGTAGCGCGCTTCGATTT
TCTCCAGATCATTGTTGATAAGTTCCACCGCCTTTGATTCAAATTCTGAAGTTTGACGTA
ACACCTCTTTGACGGCCGAGCCCTCGGGCAGCACGCAGGCGAGTCCGTCTATCTCGGCGG
CGAACAGCGTGAGCTCGTGTATGGTGAGGCGGTACTTGGGGTCGTGGTGTCGGGTGCGCG
TCCTCATCTTGTTGAGATCGAGTTGTTGTATCACTGAAGCGCATTTCTCTGCGTCTTCGA
TAGCAGTTTCTAATGCGCGTACTAGTTCCGTCTTGTGAATCTTAAGTTCGTGAGCCTTCT
TCAAATGCGCCCTCAATCCGTCGAGATCACAAGTCTTGGGCGTGTCAGGATCTAAAGCGT
TCTGCACAGCCTCGGCCCACTCTCGGAATTGTTCTGACTTCTTCTTTAACTTCTCTAACA
TCGCTGGTAACTCGTCCAGTGTGTATCGATATCTCAGTTTGTGTGCTTGAGGCGTACACC
GACACAGCTCGACGTAGTGCCGGAGACACGCCACGTACGGCGTGCACGAGCACGTCACGC
ACGACAGGAAGCACGTCGTCTTGCAGAGATGGCACTGCCTCTCGTCATCCGGGAGTAATT
CGAAGGCTTCGCGTTCCGCTTCCGTTACACCCCAATCCAGTAATCCCTTCCTAAGTTTCC
GTTCATCGTGCAGCATAGTTCTCATATCCCTGTACGCCGCGAGGGCAACGCTAAGACTCA
ACGTATCTGCTTCTAGCGCCATCTTGCAAACTAGCTCGTCGTGTGAGAACACGCAGTACC
GACGTAGTGTAGAGTAGTGTGTGATGCATTCTCGACCCACTTTTAACCAATCAGCTGGTG
TAAAGTTGACCGCTTCAGCGAAATTGTATCCCTGGTTGAACCCAGCGTGGTACGCGCGAG
GAAACGTTATCACAAACTCTCCTGCATGTTGGTCCATTCTGTAAACAGGAACGCCTGCCT
TCATCAGAACGTTAGGGTTCATGATGGTGACGAGTTGATGCAGTAGATCCGGCTGCAGCT
GAAACAGTTCTGGAGCTTCCGCCTTCATGGCAGCTTCGAATTGTTCCGCTTTTGAACTTG
GTACACCATACCAAGTCTTAGGTTCTCCCCAATGTAGATAATTGATGGAGTAACTCCAGT
GATCTTCGTTGTGCCAGCAGAATGTAGCAAAGCACATACCCACGTACAACCATGGTATCT
TCATCCCAGATATATCAGCGTTGATATGCCCAAGCACGGAACCTTCCAGAACAGGCAGAT
TATTCAGATTCCAGCTGGAGTCAGCGTACTGTTGCTCCCCGGGGTACAGATGAGCGCTGG
ACTTGGTCGGGAACCCGGAGCCGTGGTCCATGGAGTGAAGGTCGGCTCCGTACTCCACTG
TGACATCTTCATCTATTGAGGATACGATGCGCCAGAATTCTTTTTCGACTGTTGACGTTG
GCACCATATGTACAGGCATGTTAAAATAATCAGATTTGAACTGATCCGCCATTTCTCCGA
ATTGTTGCAACGTGTACTCTCGCGTCGCCTGTTCGAAGCCAAAAGCTTCTGTTGGTTTTG
AGACCTCCTCAGCCAAGCAAACGGGGCACCTCCAGTCTCCTTTGGGCACGTCAGCGAGCG
GCGGCACCAGACAGAACGTGTGGTAGGAATCGTCGCAGCCGTCGCAAAGAAGCATCTGTT
CTTCGACGTCACCTCGACCGCAAAGGTGACACATGTATTTTGCTAACGGATCATCAGGAT
GCATGTTCGGTGCGGGCGGCGCTGGTGTCACAGATACAGTCATATTCGACACTCTGTGTT
CCCGGAGGCGAGTGGAGCGCGTAACGCGAGCCCTTGAGCCGCAACTCGCGCCCGCTGACA
TCCATTTGTTTTCACGGGGACTAGTCCTCCTAATTTCCGGGTTCTCCTCCTTAATAGGAG
TCTTCATATTGGCGTCCTCAGACCCCACGAGAGCCCCTTCAGTGTGACTGCCTTCAGCGG
CGGGCTCGGGCTCCGACTTGTACCTCCTGGCAGGGGGCGGAGTCGCCGCAGCCCCGGGCG
GACACTTGGTTGTCGAACGACTTCGTGTGGCCGTCGCTTTTTCAGGGGTCTGTTCTGATT
TGACCTCGATTTTGGTCTCCTTATTATCGCCGACCACTCCATTGTTCTTGAACACGTCAT
AAGGATACAGGATGCGTTCATAGTGATTCTTCAGTATTGAACCAACGCCTTTCCCTTGAG
GGTAGCCCATACGACGAGCGATCTTCGACCATTTTCTTTCTGATGAGCATACTTCGAAGC
CACCGGCTTCTTTAACAATTTTATGTAATGAATAGAGATCAAGGGGCTTCCGTTCCACGG
TCGGGATCTTGAACGTGGATCCCTGCAGCTCCCAAAACTTTATAATTTGATCTAGGAAGT
TGAGCTCACACGAGTGATAGCCTCAAGTTCGTTGAGTCTTTGTATTCTAGGTGTAAACCG
TAGACGGTCAACGTCAACAGCGAATGGTGGTTGCCAATGCGCTGGTGGTTTTATCTTGCA
AATGCCAGATTTCTCGGCGATAGGACGTATTTTACTGATGTACGCCAAAGGGTCCAGAAA
CTCTTCTGGGGTCGGCTCGAAGACGGGAGCCTCCGGAGGTGGAGTAAACGTAAAGTTATC
AGGTTTCATGGGGGACGCTGAGTCCCCCATGCTAACTTCGACATTAGCTTCGTCACATTT
TCCCATTTTCGAGAGACACTATGCAGTTCACACAAATGCAACTGTAAATAACACTTTACC
ATCATCTATCGTTAAGGAATGAATAAAGCACGACCGCAAAGAAATAACAGTAACAAAAGT
TGTCTTTCCATAAGGAATCTACACGAGATAAATTATTGAAATGATCAGCAACAAATAACA
CTCTCCACTTGCACGTCCGCCA
(5002 bp)

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