SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaMG_comp26878_c2_seq1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_syntaxin-binding_protein_5_isoform_X2_[Bombyx_mori]
Ontology
GO:0005096 F GTPase activator activity
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006887 P exocytosis
GO:0008021 C synaptic vesicle
GO:0010468 P regulation of gene expression
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016192 P vesicle-mediated transport
GO:0017075 F syntaxin-1 binding
GO:0017137 F small GTPase binding
GO:0030054 C cell junction
GO:0030141 C secretory granule
GO:0030193 P regulation of blood coagulation
GO:0030659 C cytoplasmic vesicle membrane
GO:0031201 C SNARE complex
GO:0031410 C cytoplasmic vesicle
GO:0043547 P positive regulation of GTPase activity
GO:0045202 C synapse
GO:0045921 P positive regulation of exocytosis
GO:0050708 P regulation of protein secretion
Transcript
Level		FPKM:1.15 TPM:0.97
ORF EntryO_TrvaMG14643_3prime_partial:A_TrvaMG_comp26878_c2_seq1
Sequence
(Nucleotide)
GGTACCACTTCTTGTCCTTGTACTTGAGCATGAGCTGGTGCGCGGAGGAGGAGAACTCGG
CGGCCTGGTTGTGCATGCGCTCGGTGCGGTCCTCCAGCTGCGACAGCTTGTCCCCGCGCT
CCACCACCATCTGGTGAGCGCGCGCCACCTCGGACGCGGCGGTGGAGGCGCGCGCCCCGA
GCTGCTCCACGGCGGCGTTGCCCCCCGGGATGTGCTTGGCGACGGTGCGGCTGCCCTTGC
CGCTGCTCTCGCCGAATAGTTCCTCCCTGTCGAGAGGTCGTGCCCCTCCTCCGAACAGGC
CCCTGAAGAAGCTCTCCTTGGGAGGCTCCGGCATGTCACGTGCCAAGAACACCTCACCCA
ACATCTCGTTCAATTGATTACAGAATTCAGCGTCGATCGTGAATTTCTGTATTTCGGAAG
GCGACGCGAGGTATAGACCGTGCCCGCGATTACTGAAGCAAAATGTTTTCGCTATCTGGT
CGGTGTCCTCGTTTACAATGAGCTGTTGGCCCCATATACTCAGCATTGGGTCTACGATAC
CCCTCTGTTTGGACTGTGTCTGGAAGCTGAGCTCCGAGAGCGGCAGGAAGTCGACGTCGA
TGAGCGGCCTCAGCGAGGGCAGGCTGTAGGCCACCAGGTGACCCGTCGACAGGTAGTTCA
CCAGGCACACGCTATCTTTCAAGCTGACGATTTCAGCTTTAACAACAAAGTCAGTTTCGA
CGATCTGTTGTCTATAGACACAGTTCTGACTAGGCAGCGCCACCACCCGCGCCTGCTTCT
CGCTGGCCACCACCACGAACTGTCTGTCTCCACACTCGGCGCCGGCACCAGCCCCGGGCG
TGGGGCTCATGCGGCTCCCACACCCGCTACTTGATGAGCTCTGTTTCGTGGGTGTTCGCT
CTCGACGTTCTCGAACATCTTTACTATCATCTTTCCAACTCTCGTATGAATAAGGAATTA
AAGCACCATTGCAGTCGAGAAACGACATCGTTAATATTGAACCTCTTAACCTAAATATAG
GACCACCGCTCGTAGAGACGACCACTGGTTGTGTGTGCCTGAGGTCCGTCTCCGGGAGGC
TGATCATCATCGTGAGCACCGAGCCCAACGTTGTGCCGATCCATAGCGTGGGCAGTAACG
TCGTGGGATCAGACTTCTTAGTGTAGCTATCGGCGAAGGCGAGGCACTGGATGCCCTCCT
GCGATATGTTCTCGAGGCTGGACATGCTGCTGGACCGAGACCGGGAGAACGAACTATCCA
GTTTGTTGAAGCGGCGCATGAGGTTGCCGGCGAAGGAGGCCTGCTGCTGCGAGGACTGCT
TGCGGCGCGGCTCGCGGCCCGCCTCCTGCTTACTGTACTTTATGTTCGGCACCGACAACA
GCCTCTGATCTCTCTGATCTTTCCTCTCGATCTCTTCCTTTTTAATCTTCCCTTTCTGTC
GAGGAGGCCTCGCGGGTCTGCCGTCTTCTTCGAACAGAGGCAGGTTGTCGGGTCGAGTCG
CCTTCTCCTCTTCAGCAGTGGAGGGAGAGGCGTCGGTGGAGACGGCGTTCTCATTAGCCT
CCTTGTCCTTCCATCGTTCCTGCAACTCCTTGTGCATCCTGTCGTACACGTCACCAGATC
TCTTCTCCTGCAGCTCCTTGTGCATTCTCTCGAACACATCGGAGCAGACTCGCAGCGGTG
ACGGGAGGTCACTCTTGTTTTTGTCACTTTCTTCTTCGTTTTCTACAATTTTATCATCAT
CTCTTGTTGGCGACTCTGCGCTAGGTTCAGTCGGAGCATCAGTCTTATCCGTCGCTTCAC
AATAAAACTGTGAGGTGCTTTTTTCAGTGACGACCTCTTCCAAGTTGTTTTCAGTGGGAA
CGGCGAAGGCAGCCTTGAACTTGAGGTCGACCTTAGAGAGCTGTCGTTTGAGGTTGAAGT
TCTTCCACGAGGTGGACTTCCGTCGCGGGTCGAGCTTGGGTTTCTCTTCGTGTTGCGGCG
GCGGTGGGGGCTGCGGCTGCGGCGCCGGGACGGGCTCGTCGCTCCCCTCGGGGCTGAGTG
CCGGCGAGGGCCGCGGAGTCTCCTCCCCCTGATCGAGGCTGGGCGAGCGTTGTCTCTCGT
GTCGCTCGTGCTGGCGGGGCGCGTGGTAGAGCGCGGCGGGCGACAGCGCGGTCACCACGC
ACCGTCGTGACATGTCCACCACCACCACGCCACGGTCACCGCCCCACGCCATGAGTCCAT
ACGAGGAGTTGAGTGTGAGCGCGGTGATGGCGTGCGGAGGTCCTTGCTGCAGCGCCACCA
GTGCGGGCTGGAACCCCGCCGTGCGCCGCGCTCCCCCCGTCCCCACCGCACCCCGCACCC
GCAGGGAACCCCACCCTCCCCATACACCAGACCTTCTGTTTTCCCCCTCCACGGAGTCCC
CGCCGCGGCTAAACGACATCGACCTCCCCCCCTCCGCCTCGGGAGACGTCTCCTCTTCTA
ACGTGTCTGTGATCATCGGAATGTCTATTACGTGTGTCTCTCCGTGCGTCTCCGTCTTGC
GGAACTTGAAGAGCAGCACGTGTCCGTGCGAGAGTGCGACGGCGAGCCTGCGCGACTCGG
CACACAGCGCCACCTGCTGCGCGGCGAGGGGGGACTCCTCGCCACACGCGTTGCTTACGG
CGCCACGCTCGAACACTTTAGAACATTTAAGTTTATATAAAATCTGTAACGTTCCCGCAC
TCGCGTCCCAAAACTTCACACTACCGTCTGCGTGCCCTGTAAGTATAATCTCGCTGTAGG
AGCAGGAGGCGGGCGCCCACTCTCCGCCGTTAATGGGCCACAGCTTCTCGCTGAAGCCGG
CTGTCTTCTTGTTGCCCTGACGACCCACCGAGTAGAACGCAGGGATCAAGTCTGAAGGGC
AGTCCGCGAAATACGAGCAGCAAGTGACGGGAGACTCGTGTATGTCCATGGGGTAGGGAT
TCTCGAAGCAAGGGTAGCCGGGAGACAGCAGGTCTATCACCACCAGGTCGTTTTGGAGGA
GTACTACTATCGCGTATGGCTCCTGGTAATCAGCAGTGTGTGGTGTTTCACACAGCGTGA
CAAAGTCGACAACGCTGTGTTCCATCTCGAGAACGGTGGTGCTCTTCCCGTTAAGAACCG
TGATGCTGTGTGTCTTCCCCGCCTTGTCCGTTGGCAGACCGCCGCTGAAGATTACTAGGC
TCTCGCCAGTTTTCGAAGTTTTCCATTCAAGTCTGTGTATCGGTTTACATGATTCCAATT
TGCCGTCTTTTGTTGCTTTTGCATGTGGATAAGAGACACTGGAAGGTCTGGGTCCCCTCG
TGGTCCAGGTGGCGAGCGCTCCGTCCACGTGCGCCGTCATCAGCTTCCCGTCGTGTTGCC
AGGCCGCCGCCCTCACCCCGTCGGCCGGTCCACCTGTCCCGAGCGACCCTCGCCATTCCG
CCGCGCGGGAGCGGAGGTCCCATACCACTAGGAGACCGGACTCGAAGGCTATTAGCAGTT
TACTAGCATCGAGTGGGTTATCACTAATGTCGACCACAGCTCCGGGGTGATTTGATCTCG
TTACTTCAATAGCCTTGTTCCAATTGATGACGTATCCGGAGAGAGCGAAGGTTTCTATGT
TGACGACGTGCACGTTGCCTCGCTCTGTGCCCACGTGGATCCACTTGGACTGAAGAGGCA
GGTGGAGACATGTGATCCTTTCTCTCTGAAACTTCAGTGACTGCAGCCGTTGTGGTGACT
TCTGCCTGAAGGTCCAGAGATGGAGCTGGTCATCAGCGGTGGCCGTCACCAGCGCCCCTT
CGTTGATGAGGAACTTGGCGTGGAGTACTGCTTCTCCGACGTCATGGCGAACGTGGGCAT
CTACTCCGGGACCTCCTAATATTCTAAGGTTTCCTGTCTTGTCTCCGATGGCGAGTAGCT
TCTGTATGGGGTCCCACGCGAGGGCTGTGGGCGAGAACGGGAATCCGTGCCGGAATGTCT
TTTTAACTTGGAAGTGCTCGGGGCGCAGCGTCTCCTGTATCTCCTGCTCGGTGCCGCGCG
GCGCCGCCTGCATGGAGCTGCGGAACCCGTCCAGCACCCCCTTGAACGTGAACTTCTTCA
TCGCGAAGTTTCGAGTCGCGGATCCTTTGTCCGAGAGCCGCTCGCGCCGGCCGCGGCTAC
ATCACAGCCGTCCGCCGCGGACAGCGAGCCGGTTTTGGCGGAAGGAAGGACCGTCGTGTG
ATGGCACGCGCCGTCTCTACTGCGCAGGCCGCCCGGGCCGCCGCCGACGCCGCCACGCGC
CCGTCACGCCGACGATCGACGAAAACTAGGCGAGGCACCGCCTCCGGAATGTACGGCAAT
GCGGCTCCAACGAGGATCGATACCGGAGCCGACGATGCACACGCGCACTCGCGAGCCGCG
ATACGCTGTCG
(4391 bp)

- SilkBase 1999-2023 -