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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaMG_comp26855_c0_seq2
Scaffold_id
NCBI non-redundant
(nr)		retroelement_polyprotein_[Lasius_niger]
Ontology
GO:0000166 F nucleotide binding
GO:0000943 C retrotransposon nucleocapsid
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0004540 F ribonuclease activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0019076 P viral release from host cell
GO:0032197 P transposition, RNA-mediated
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
Transcript
Level		FPKM:3.79 TPM:3.19
ORF EntryO_TrvaMG14491_3prime_partial:A_TrvaMG_comp26855_c0_seq2
Sequence
(Nucleotide)
TATTTACTAAACTTTCACACTTACTTATTTCATGAAGCAATCTCGTTGAGGATTCACACT
TTTCAGGATCAATCTTGTTTCTAATAAATTCTGGTAAGCCGGCTGCTATAAGTGTCACCA
GACTTTTCCCACTTATATTTTCGTCCATATCTAGTAATATTTTTTCCTTTCTTATGGCAT
AATCCATTAATGTTCCTTCCTTATATTTATAAAATATGGCATACATTGCCGTACTCCATC
CTTTATCAGCAAATGTATCTAAAAATTTATTTTTCCACTCAGACCATCCAGCCTCGATTT
TCAAAGTCCTCAATGTTGCAGAGTGCCAATCTGCACCTGTTTTATCCAAAAATAATCTTA
ATATTTCTATTTTTGTTGTGTCTCTCTGAATTTCAAATCTTTTACATTCTATCTCAAATG
TTTCGATCCACTGCTTCGCATTCGAGAATTTACATACAAATTTTTCAATCATAAATCTTT
CTGATATATTTTTCAAATTGAGTTGACCCTCGTTTTGCTGTTTGGATCCTACGAAATCTG
TTTCTTTTCCTTCATTTAGATATAAGTCGTTAAACATTAAATTATCATCCTCATCAAAAT
AGGCTTTTATCATTTCTTCTGTACATGTAATCCATATTGTTCTTTCTTGACCTCTTTGAT
TTAAACTCTTTTTTATTCTTTTATAGGTTTCTGTTTTAGTTAGTGCTATATGGCGACTCG
CGTATCTATCAGTTTCAGACAATATATACTTTTTGTTATCCTGTGTTGTAATTGAAGTTA
TGGCAATCACGCTCGTCTTATTGTCAGTTTGTGATGCTTCAAGTTTAAATGCAAACTGCA
ATTTTTGTGCCATTATAAACAAGTATTGTCGTTTTATAAGACAATAGATAGCAAGAGGCA
AAATTAAACTTCAATTTGTTTCTCTGAAAATAGAGAAACGACAATAAAAGTTTATTGCTA
TCACCTCTCGTTTATATCATCTAACAAACTTTACAAATTAATCTTTAAATAAACTAAAAT
TATTATAATTAAATTATCTTATCATATTGCTATTTTTACATTTGACATTGACAGCCCGAT
CGACGCGACACGACGCGACTCTCTCTGGAACTAACAATGCGCGCGCATAATTAAGTTGAA
GAGATAATTCTCTTTACATCTCCCTCCTTGGGGGTGAGAATTACTCCAGTAATTCTCATT
GTAGCTGTACCATTATTCAGCGTTATCCATCATTTATTCCATCTTCCATTCGAATAAGCT
TTGTTATATGGTATAAGCTTGTATTCTTTTTTGTTCTGCCTGTGTTTATTTTGTATATTG
TATTTGATATTTTTTCTGTAATTTCAAATGGACCGATTCTTAAATTATCCAATTTTTTTC
TATTTAATTTATTCCCGTTTTCAATATATACTAGATCTCCTATGTTAAATTCACATTGTA
GTCTGCCTTTATCAAATAATTTCTTATTATATGTATGTGATTTAATTGATCTTTCTAGTG
CTTGTTGTCTGTCTTTAATCCAAATTTCTGTATCTGTTGGTTGTCGTAATTCTTGTGGCA
AGATGCTTGTGGCTTTTCCTTCTAATAAATACACCGGTGCAAAGCCTGTTACCGTGTGCT
CTAATTCATTGTACTTATCTACACATTCTCTTGCAATTGACGTCCAGGATTTCTTCTCTT
TTTTTTCATTTATTTTGCACCTCATTTTGTTAACTAGAGTCTGGTTTAATCTTTCATTGA
GTCCGTTTGAAAACGGAGTATCAACTGCAGTAAATATTAGTTTTACATCATTATCTGTCA
AAAATTCTTTAAATTCTTTTGAATTTATCCCTGGATACTGATCTGATAGTAATATCTCAA
TTTTTTCCGTATCCAGAACTTTTTTTACCAATTTAATGAAATCGGCAGCATTTTGCGTTT
TTGATGTCAGAATGAACGCAAATCTTGTATAATGATCAACCAACAAATGTAAATATCTTT
TTGTTGATCGTTGTCCTCCAAAGCCACCGATGGTATCTATCGACATTATCTGAAATGGTT
TTGATGCTGGTCCTAGATGTGACATCAGTCCGTATTGAATTCGGCCTCTTGATTTGTTTT
TCAAGCATACTTCACAATGCTTACATATTTGTTTTATGTTTCTCGTTAGGTTCTTCGCTG
TATAATAAGGACTGATTTTTTTAATCATTTGATTTATCCCTAAATGGCACCATTCGGTAT
GTATTTCCTTTACTAGTCTTAGTCCTGCTTCTTCAGATAGTATATTTTTTTCTCTATTGC
GATTTTTTTTGTATAATATCCCATTTCTTTCGGTTATTTTGATTTTCTTTTGGTTTATTT
TCTCATTTCTTTTCTGATCAGTTTTAATATCATCTAATGTTATCAGATTCACCGTTTTCA
AAATTTCTTCATCATTACTATTATCCTCCAATACTGGGTTCCTACTGAGACTATCTGCTT
CAGTATTTATTTTTCCCGGAATATATTTAATGTTGAAGTCATATTGGGACAAATAAAAAG
TCAGTTCGCCAAGTTCATCATCTGTTCTAGCCCTTATGTTGAGGTTTTCTAGTGGTTTGT
GATCCGAATAAACGGTGAATTTTCTTCCTATCAGCCAAAATTGCCAGTATTTGATAGCTT
CTTTGATTGCTAAGCATTCAAGGTATATTGCCTTCTTTCTCTTTTGTGTGTCATTAAGTT
TCTTTGAAAAATAGCCAACTGGTTTTTCTTTTCCATCTTTTTGAATCTGTTTTAATATTG
CACCTATACCATTCAACGAGGCATCCGTGTATATATTAATAGGCAGGTCTTTATCAAATA
TTTCCAGTACTGGCTGTGAGCATAATATATTTTTTATATCAGTGAAAGATTTTTCACATT
CTTCAGACCATATAAATTGAGCATTTTTTCTTAATAACCTATGCAATGGATCCAATAATA
TTGAACTATTTGGTACATATTCGTGGTAAAAGTTGATCTTCCCTAGAAATTGACGAATAT
TCTTTTGGGTCTTTGGCGTTGGAAAATTCCTTATTGAAATAATGTTATCTTTGAGTGGTT
TTACCGTATTATTTCCTATTATATGTCCTAAGTATTTTACTGAAGTTGCTGCAAACGTGC
ATTTTGTAAATTTTAGTCTGAATCCTTCCTTTATTATTGCTTTAAGTACTTTTTCTATGT
GTTCAATATGTTCTTCAAATGATTGTGAAAATATTAAGATATCATCAATGTAATTTTCTG
TAAAGTCTTTCAAGTTATTATTTCTTAATATATTTGATAAAATTCTTTGGAAGATGGCAG
GTGATGTTTTCAGTCCAAATGGTAGACAGGTCCATTGATAATGTCCATCCTGTGTGACGA
ATCCTGTCTTTTGCCTGTCCTCAACACGTAGTGGTATGGACCAAAACGCGGAATTTATGT
CCAATGTGGTAAAATATTTACAATTTCTTGCTTTAATTATCAAGTCGCTTATCAATGGGA
ATGGCTGTGCTTGTGGTATGACTATTTTGTTTAGTTCACGAAAATCAATACAAAGTCTCG
ATTTTGTATTTTCGTCTCTTTTAAATGCCAAGGTAACTGGTGCAGCAAAGGGGCTGTATG
ATTCCTCAATTAAGTTATTTTTTAGTAAATTAGCTACCTGTTTTTCTATTTCCATTTTGT
CTTCTATTGTGCAACGATAAGGTCTTTTGCTGCAGTACTTATCTACCAGTAAGTCTATCC
GGGCTTCATATTCTGTAACAGTACCTACATCATATTTGTCTTTGGCAAATACAGTATTAT
AATTATCTATTAAATTTTGTATTTGAGTTTTTTTCACATTGTCTAAGTGATGTAGATTTG
TTATAAAGTCGTTTTTACTAACATGCTCGTTAAAATTGATTTTAATTGTTTCTATCTCTT
CTAATAAATTCATTGTATCTATCTTCCTCTTTGTCTTTTGTTGTATTTTTAGATCTTCAT
CTTGAGCTAATTTAATTTTTTTTATCATATCTAGTCCTATAATGAAATCTTCAAAATCTA
GTTTGTCTATAATAAAAACATCAACATATTCTTCTATATCAAAAATCTTTACTTTTATTC
TTATTAAACCTTTTGTGTATGTCACACCATTGACCGTTCTTAATAATATTCTATTTTTAT
CCTCTGAATCATTCTGTATTTTAACTAATCTTTTGTTTATTAGAGAGACTTGTGAGCCTG
AATCATATGTTCCATTTATTTGTATTTTGTCTTCTAATAACATATTAATTTTTATCAATG
GTGTGATTATTCGTTTTTTGTGTCTTCGCTTAGATTCACTTCTATAACCGAATTACTTCC
AATCCTTTTTTTTTCTATCCCTTCTTTTTTAAACCAACATGACTGTTCTGGGTGGTATCG
AGTGCCCTTACTCAAGTTCTGACAGATTTGGCATGGCTTTTTGTCTGCAATGTATTTTTT
GTCATCTTTTTCTTCTCTCTTTTTTATGAAGCTTTTATTATTTACAGGACTTTCATTAAA
T
(4501 bp)

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