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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaMG_comp26847_c0_seq1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_pre-mRNA-processing_factor_40_homolog_A_isoform_X2_[Bombyx_mori]
Ontology
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005685 C U1 snRNP
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0007010 P cytoskeleton organization
GO:0008360 P regulation of cell shape
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0016363 C nuclear matrix
GO:0016477 P cell migration
GO:0016607 C nuclear speck
GO:0032465 P regulation of cytokinesis
GO:0044822 F RNA binding
GO:0070064 F proline-rich region binding
GO:0071004 C U2-type prespliceosome
Transcript
Level		FPKM:5.76 TPM:4.85
ORF EntryO_TrvaMG14461_complete:A_TrvaMG_comp26847_c0_seq1
Sequence
(Nucleotide)
TTTGGAGATGAGAATCAAACAAAATTTTATTTCAGTATGAATTTCTGCACATATCAATAA
AAATAAGCAATTGATTAATCACTGAATAATTATTGTCAGTTAGATTACACTGTGATTTGA
ACAGATAGTTTCAGTTGCAGTGTAGAACTTCATATTTTGAAGTGTGATCATGGAACCACC
GACGGCGGGGACCGGTTCACCAGGGCTCATAGGCGCGCCTCCTCTTCTTCCGCCCCCGAT
GTTGGCGGGGCTGCCTCCGCCGATGCCGCCGGCTGTGGCTATGCCCCCCGTGCCGGGGTT
GCCCCCGAATATGGCTGCGTTACCACCGCCCATGGGTTTCCCTCCTATGATGCCGCCACC
TTTTTCTATTCCACCTCCAGGATTTCCTGCATTCAAACCTGAATTAAATGCTCCTGCACC
AGATATAGCTCCATTAGCAAATCAAAGCAGTCCTTGGTCAGAACATCAAGCACCTGATGG
AAGAACATATTACTACAATTCTGTCACAAAACAAAGCTTGTGGGAAAAACCTGATGATTT
AAAAACACCAGCTGAGAAACTCATGTCCAGTTGTGTATGGAAAGAGTACACAACTGATGC
TGGAAGACTTTATTATCATAATATTGAGACCAAGGAGTCAAGTTGGGTTGTCCCAAAGGA
ATTGCAAGAGATAAAAGAAAAAATTGCTGCTGAAGAAGCAGCTCAGCGTATTGTAATGGA
AGTAACACCAAGTGAAGTTCCACTCCCAGCTGAACCGGCCGGATCATCAGCTCTAGACGA
AGCCATGGCCAAGACCTTAGCAGCCATCGATACCACTCTAGCCACATCAATACCTGTCCC
TGATGAAATTAATCCCGAAGATGCTGCGTCAATGCACAATGAGGGTGGAGATCAACCTGA
ATATAAAGATAAAAAAGAAGCAATCGAAGCTTTTAAAGAACTTTTGAGAGAAAGGAATGT
CCCATCAAATGCAACCTGGGAGCAATGTGTCAAAATTATTTCTAAAGATCCACGTTATGC
CACTTTTAAAAAACTCAATGAAAAAAAGCAAGCATTCAATGCATACAAGACTCAGAAACT
TAAAGATGAAAGAGAAGAACAAAGGTTAAAAACAAAAAAGAACAGAGAGAATCTTGAAGA
ATTTTTGTTGAGTTGTGAACGTGTTACTTCATTGACGAAATTTTATAAATGCGAAGAAAT
GTTTAGTAATCTAGAGATTTGGAGATGTGTTCCTGAATCAGATCGAAGAGATATATTTGA
AGACTGCATTTTCACTATTGCTAAGCGTGAAAAAGAAGAAGCAAAAGCCTTAAAAAAGCG
GAATATGAAAATGTTAGCACAGGTTTTAGAGAATATGAGTGAAATTACATACAGTAGCAC
ATGGAGTGAGGCACAAGTACTATTGCTTGAAAACTCCGCTTTTAAAAATGACGTGAGTTT
ATTGGGAATGGATAAAGAAGATGCACTCATTGTATTTGAACAACATATACGAAATCTCGA
AGCCGAGTATCAACAAGACAGAGAACAGATAAAAAAGAGAAACAAACGACAGCAAAGGAA
AAATAGAGACAACTTTTTGGCTCTACTAGACAGTCTTCATGAAGAAGGTAAATTGACGTC
GATGTCATTGTGGGTCGAGCTGTATCCAGTCATCTCGGCTGACATGAGATTTACAGCTAT
GTTAGGGCAAAGTGGTTCGACGCCTTTAGATTTGTTCAAATTTTATGTCGAAAATTTGAA
AGCTAGATTCCACGACGAAAAGAAAATAATTAAGGAGATATTGAAAGATAAGGATTTCGA
TGTTAAACCTGACACAACCTTTGAAGAGTTTGCTACAGTCGTTTGCGAAGACAGCAAGTC
TGCATCTCTTGACGCTGGAAATGTGAAACTTACTTATAATTCACTCTTAGAAAAGGCTGA
GACTAGAAAGAAGGAGAAACAAAAAGAAGAATCCAAGGCTCAGAAAAAAATAGAATCGGC
ATTTAAATGGGCACTGAGTGACGCAAACGTTGATCACTTACTTTCGTGGAATGAAGTTAA
GGAGAAACTGGATTTGGATGCCCCTGAATTCGCAGCAGTCACCAGTGAAGAAGATAGAAT
TAGAATTTACAAGGATTATCAGCACGAACAAGAAGAGACGTGTATGCATTACCATCTGCC
GAAACCGAAAAAGTCAAAACGCTCAAAAAAGAAGAAGCGTTCTCATTCCGCATCTCTGTC
TCGATCGCCGAGCGCGTCTCGCTCGCCGTCGCCCGCGCCCAGCCACGCGTCCGTCGCCTC
CTCCGACGACGCTCGGAAACACAAGAAATCCAAGAAAAAGCATCGCAAACACTCTCCCGC
ACCGAAATCTCCGTCGCCCGAGGAGGGTGGTATCAGTGACGACGAAGAAGTTATTCGCCA
TAAAAGTAAAAAGACAAAGCGCAGCGCCCCAAGCAGCCCTGAACCGGAACAGGAACCGGA
AATCGTTTACAAACCCAAGAAGAAGAAGGATAAGAAAGACAAAAAAGAGAGATCGACTGC
GTCGGGTGCGGCGTCGGGCGCGGCGTGGAGCGACGCCGAGCTGGAGTCGCGGCGCGCGGC
GCTGCTGGCCCAGCTGCACGAGCACGAGGCGGACTGACCTCGCGTCCCGCACGTGCACAT
CTTCAACCAGTACCCGCAGCGCGCGCACGCACAACGAAACGATAACTGAACACGCAACGC
TAAATACTTTCATATTACATGTGAAAGTGCTAAACATTTGTATTTATAAATGTTAAGCTT
AATGTCAGCGACACATAAGTGTGTTGCCTTCTGAACAGTATATGTGCTCTGTGTCTGCTG
AGTGTTGCGTAATCCTTATACAGGGTGTCCCAGCACTATGAGACATGAATGGGAAGTACC
TTATTGGATAAAAATGATTTTTTCACAAAGATTACTGAAATTAAGCAATTTTTCGATTGA
GATCATACAAAATACAGGGTGTTAATTTGTTCCGATTTTGTTAGTTCGATTGTCATTAAA
TCCAAACAATTTACGAAAAATTTTTGATTGCAGAATAAAATGATATTTCCTTACAGCAAA
ACTTCCAGTACTTTCCATTCATGTTGCACAGTACTGGCATACCCTGTATAGTGAAATGAA
CATCGTTGAACATTACTAAGGGCTTCTGCTGGAGTGTATTGAGTTTGGTGTAAGTGTGAT
CGCGTTAAACTGCAAGCTTCGCAAATTGAAGATGAACACTAAAATAAAATTATATTTGTA
GTATGTTTAATTTAAAATGAATATACTATGTATATAATTGCTAACTAAGATTAATTGTTA
TGTTATGTGTTAGAATATAGGTATATCACACAGATTGTAGGGTATTAAAGTGCACTGATG
AAAACGATTTAAAAAAAGTTCGTATGCACACCCTGTATAACCTTATACGCGTGAAAGTAA
AGATGATAGTTTCGAAAATATCAACTCTACAGGGTTGATCTGTAACTTTGGA
(3472 bp)

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