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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaMG_comp26840_c0_seq6
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_serine-arginine_protein_55_isoform_X4_[Papilio_xuthus]
Ontology
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0007067 P mitotic cell cycle
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0016607 C nuclear speck
GO:0031440 P regulation of mRNA 3'-end processing
GO:0035062 C omega speckle
GO:0035327 C euchromatin
GO:0048024 P regulation of mRNA splicing, via spliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:8.56 TPM:7.20
ORF EntryO_TrvaMG14419_complete:A_TrvaMG_comp26840_c0_seq6
Sequence
(Nucleotide)
CGACGCTACTGCGCTCACTGATTTCCGGCAACCCTGATTTCCGGATTCAAGAAATTGTTG
TGCACGTGTAACCGCGCGTTTAACAAAGATTAGAAATATATTACTATGGGTTTTTGTTTT
ACAAATTAGTGTGTAAATAACAGATGACTTGCTAATCTAACGTATAAAATAATATTTCCA
ATAGTTTGCTCGAAAATGGTTGGATCTCGAGTGTATGTTGGTGGACTCCCCTTCGGAGTA
CGGGAGAGAGACTTGGAGAAGTTCTTCAAAGGCTTTGGAAGAATCAGGGATATTCTTATC
AAGAATGGATATGGATTTGTTGAATTTGAAGATTATCGAGATGCAGATGACGCTGTTTAT
GAATTGAACGGGAAAGAATTACTTGGTGAAAGGGTGACGGTGGAGCGCGCACGGGGCACG
CCGCGCGGCTCCGACCGGTGGCGCGGCTCGCATCGCACGCCGCCCCGACGCGCCCCGCCG
CAGAGACAAGAACCGTCTGTATACACACCCACCCCCACACATTCACACACACACACCAGT
ATAATAGAGGGAAGCCGATATAAGATCTTGCAAATAGGTGTATTTAGTTTTCATTGAATT
ATTGTAAACTACCTTGACACAGTATCTGGTACTATTTCTTGGTAGTCTATGAATGTCGAA
TAGGAAGCCGGTAAGAATGGAGTTATATAGAGCCCTCGTCACTGAGACACACACACCGAG
ACAGAATGGAACATTGATATAGACATACTACCATAACCACACTCACACACCAATACACAT
AATACATTTAGGACAGCAATTCACACAGGATACACAACATAAGCTCACAGACACATGACT
TAGGTACTCAAATCACACTTGGTTCTTGAATGTGTGGTCCTTAGAAGCTGCGCTTAATAT
TTAACAACATTGGGACAATCACATAATTCTCGACAGCAATATGTAATTGTGAGTATAATA
ATTGTAAAAAAACAAGATTTACTGATAGTACAGTAAATACTGAGACACAAACACAAAATA
TACCATAAAAATTACAAACCTTAGCTTAGACTAGAATACTGTCCTAACCATGTTATAATC
CATAGTAGAGATCCATTTATTAATATTTGCACTCTTAATTACATTGTTAACAGTTCTTTT
GTAAAATTAGTTTTATCATTTTGGCATGTTCCAAATTTCTTGTTTAGTAAGTCTTCCAAA
ATATTGTTAATTGTTGTAATTATTAAATATCATCATCATAAACTTTTTTAATCTCCTTAG
GCTAGGTTCAGAATTTGCAGTGATACAGTAGCATTAAACTAAAAACAAAATCTAGTGATA
TTTGCACCAATCAAGCATGCTTAAGTCTTTAAATGACCAGAGACAAAAAAAATAATGTAA
CATAAAATGAAATTTAGATCTTCAGATTTCAAATCAGCTCTTTTAGATTTTAAAACCAAA
TAAAATCAAGAAGAGCTGAAGTTCATTGGAATATTACAATTCATGTTGATTGAATGCAAA
GATTGTCTAGTGATAGATTCATGACTGTAAAATAATCGACTATGCCCAGTCGTAGTTTTA
CAGTTTTGATATATTTTTTACAGCAATGACCACAATAATTCTAGATATGGGCCTCCAACG
CGCACCGAGTATCGTCTTATCGTCGAAAATTTATCTAGCAGGATCAGCTGGCAGGATTTG
AAAGATTATATGCGTCAAGCTGGTGAAGTCACTTACGCTGATGCACACAAACAACACCGA
AATGAAGGTGTGGTTGAATTCGCAACCCACTCGGACATGAGAGCCGCGATTGAGAAACTG
GACGGAACTGAACTGAACGGTCGTCGTATTAGACTTGTCGAAGATCGCAGATCGTCTCGT
AGGCGTACGCGATCTTCCTCCAGCCGCTCTCGGTCTCGCTCCAGGGACAGGAGACGCTCG
CGATCCAGATCTCGTCGTTCATCTCGCTCTAAGTCTAGGCAGAAGAGCAAGAGCCCTGCG
CCTAAATCACGTTCCAGGTCTCGTTCCAATGGCCGCAACAAAGATGAAGAAAATCGCGGT
CGCGTCGGAAGTCGCTCGCGCTCTCGGTCGCAGTCGCGTCCTGATCGCAACGGACGGCGG
TCCACATCGCGGGACAACAAGCCGGACTCCAAGGAGAGATCTCGTTCTCGCAGCAAGGAG
GCGTCTCCGAAGAGGGAGGAAGAGCGGCGTCCGACGAAATCTAGATCACGGTCCCGGTCT
CGATCCCGATCCATGTCGCGCGGACGATCCGCCACCGGCTCGCGGTCCCGCTCCCGCTCC
CGCTCCCGCTCCCCGAGACAGAACGGACAGCCGCAGGACCGCGACCAGAGCACTGACCGC
TCGCCACGTAGCGGCGATTAGAACTTACGGATAGATTAGTAATAAGTACTTTTAGATTTA
ATAGTTACACCATAAGATTTACGCGGAAGGACGGCTTGACTAATGCCTAATTTACATGAT
AATTTCGTGAAAGTAGTAGTGTCATATTAATTTCGCTGCATTTCTAGATGAAGTTTCCTG
TGAATATTTTGGATTTCGCAAAGAAGCATCATGCAATTGCAATTAACTCATTGTTGTCTA
ATAGTTTTAAAAAGGTTTACTATTAATAATGTTATCTAAATGAGTTACTGATTCATTTTG
AGTGATCAATTGACTGAAGCCGAACTTCTGTGCTAGTTGTATTGTGGTTAAACAATATTA
TGGCTGCGATTTTTTGCGTTTATTGCAAAATTGTCTTGTGTAACTCACAATGACGTAAAT
TTTTTGTCATAGAAACACGTCTAATTTATATTGTTTGAAATTTTAAATTGCACGTGATGT
GTTTCACATGATATTTTTATTCAAAACGTAGGAAGGTTGCAAGGTTACGGTTTACGTGGC
CTGTTTAGAGTCACGGTTGTACTATTAAGATTTTAACGCGCACCGTGTTTGCGATTCACT
TTTCAACACTCATTGTCACGTTGTTTTATTTGGTAATGTTACGGTTGCCGCTATTTTCAG
TTAAATGAATTTATCTTGGTTTACTTAATGTAATTCAAGTTTACGACTCTTCAAGTTAAA
TAGACAGTAAGCTAATTTGTAAATAATGATTTTTATTAACCAAATAAATGAGGATATTCG
AAAAAAA
(3127 bp)

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