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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaMG_comp26840_c0_seq1
Scaffold_id
NCBI non-redundant
(nr)		splicing_factor_arginine/serine-rich_6_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0007067 P mitotic cell cycle
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0016607 C nuclear speck
GO:0031440 P regulation of mRNA 3'-end processing
GO:0035062 C omega speckle
GO:0035327 C euchromatin
GO:0048024 P regulation of mRNA splicing, via spliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:3.47 TPM:2.92
ORF EntryO_TrvaMG14403_complete:A_TrvaMG_comp26840_c0_seq1
Sequence
(Nucleotide)
CGACGCTACTGCGCTCACTGATTTCCGGCAACCCTGATTTCCGGATTCAAGAAATTGTTG
TGCACGTGTAACCGCGCGTTTAACAAAGATTAGAAATATATTACTATGGGTTTTTGTTTT
ACAAATTAGTGTGTAAATAACAGATGACTTGCTAATCTAACGTATAAAATAATATTTCCA
ATAGTTTGCTCGAAAATGGTTGGATCTCGAGTGTATGTTGGTGGACTCCCCTTCGGAGTA
CGGGAGAGAGACTTGGAGAAGTTCTTCAAAGGCTTTGGAAGAATCAGGGATATTCTTATC
AAGAATGGATATGGATTTGTTGAATTTGAAGATTATCGAGATGCAGATGACGCTGTTTAT
GAATTGAACGGGAAAGAATTACTTGGTGAAAGGGTGGTGGTGGAGCCGGCGCGGGGCATC
GACCGCAGCGCGGACCGGTACCGACGCGACCGGCACTACGAGCGCTCCGGCGGGCCCCGC
TCGCGATACGAGTGAGTCTCTAGCCGCCGTGTGCGTGTGCGCTATGTTGTAGGGTGACGG
TGGAGCGCGCACGGGGCACGCCGCGCGGCTCCGACCGGTGGCGCGGCTCGCATCGCACGC
CGCCCCGACGCGCCCCGCCGCAGAGACAAGAACCGTCTGTATACACACCCACCCCCACAC
ATTCACACACACACACCAGTATAATAGAGGGAAGCCGATATAAGATCTTGCAAATAGGTG
TATTTAGTTTTCATTGAATTATTGTAAACTACCTTGACACAGTATCTGGTACTATTTCTT
GGTAGTCTATGAATGTCGAATAGGAAGCCGGTAAGAATGGAGTTATATAGAGCCCTCGTC
ACTGAGACACACACACCGAGACAGAATGGAACATTGATATAGACATACTACCATAACCAC
ACTCACACACCAATACACATAATACATTTAGGACAGCAATTCACACAGGATACACAACAT
AAGCTCACAGACACATGACTTAGGTACTCAAATCACACTTGGTTCTTGAATGTGTGGTCC
TTAGAAGCTGCGCTTAATATTTAACAACATTGGGACAATCACATAATTCTCGACAGCAAT
ATGTAATTGTGAGTATAATAATTGTAAAAAAACAAGATTTACTGATAGTACAGTAAATAC
TGAGACACAAACACAAAATATACCATAAAAATTACAAACCTTAGCTTAGACTAGAATACT
GTCCTAACCATGTTATAATCCATAGTAGAGATCCATTTATTAATATTTGCACTCTTAATT
ACATTGTTAACAGTTCTTTTGTAAAATTAGTTTTATCATTTTGGCATGTTCCAAATTTCT
TGTTTAGTAAGTCTTCCAAAATATTGTTAATTGTTGTAATTATTAAATATCATCATCATA
AACTTTTTTAATCTCCTTAGGCTAGGTTCAGAATTTGCAGTGATACAGTAGCATTAAACT
AAAAACAAAATCTAGTGATATTTGCACCAATCAAGCATGCTTAAGTCTTTAAATGACCAG
AGACAAAAAAAATAATGTAACATAAAATGAAATTTAGATCTTCAGATTTCAAATCAGCTC
TTTTAGATTTTAAAACCAAATAAAATCAAGAAGAGCTGAAGTTCATTGGAATATTACAAT
TCATGTTGATTGAATGCAAAGATTGTCTAGTGATAGATTCATGACTGTAAAATAATCGAC
TATGCCCAGTCGTAGTTTTACAGTTTTGATATATTTTTTACAGCAATGACCACAATAATT
CTAGATATGGGCCTCCAACGCGCACCGAGTATCGTCTTATCGTCGAAAATTTATCTAGCA
GGATCAGCTGGCAGGATTTGAAAGATTATATGCGTCAAGCTGGTGAAGTCACTTACGCTG
ATGCACACAAACAACACCGAAATGAAGGTGTGGTTGAATTCGCAACCCACTCGGACATGA
GAGCCGCGATTGAGAAACTGGACGGAACTGAACTGAACGGTCGTCGTATTAGACTTGTCG
AAGATCGCAGATCGTCTCGTAGGCGTACGCGATCTTCCTCCAGCCGCTCTCGGTCTCGCT
CCAGGGACAGGAGACGCTCGCGATCCAGATCTCGTCGTTCATCTCGCTCTAAGTCTAGGC
AGAAGAGCAAGAGCCCTGCGCCTAAATCACGTTCCAGGTCTCGTTCCAATGGCCGCAACA
AAGATGAAGAAAATCGCGGTCGCGTCGGAAGTCGCTCGCGCTCTCGGTCGCAGTCGCGTC
CTGATCGCAACGGACGGCGGTCCACATCGCGGGACAACAAGCCGGACTCCAAGGAGAGAT
CTCGTTCTCGCAGCAAGGAGGCGTCTCCGAAGAGGGAGGAAGAGCGGCGTCCGACGAAAT
CTAGATCACGGTCCCGGTCTCGATCCCGATCCATGTCGCGCGGACGATCCGCCACCGGCT
CGCGGTCCCGCTCCCGCTCCCGCTCCCGCTCCCCGAGACAGAACGGACAGCCGCAGGACC
GCGACCAGAGCACTGACCGCTCGCCACGTAGCGGCGATTAGAACTTACGGATAGATTAGT
AATAAGTACTTTTAGATTTAATAGTTACACCATAAGATTTACGCGGAAGGACGGCTTGAC
TAATGCCTAATTTACATGATAATTTCGTGAAAGTAGTAGTGTCATATTAATTTCGCTGCA
TTTCTAGATGAAGTTTCCTGTGAATATTTTGGATTTCGCAAAGAAGCATCATGCAATTGC
AATTAACTCATTGTTGTCTAATAGTTTTAAAAAGGTTTACTATTAATAATGTTATCTAAA
TGAGTTACTGATTCATTTTGAGTGATCAATTGACTGAAGCCGAACTTCTGTGCTAGTTGT
ATTGTGGTTAAACAATATTATGGCTGCGATTTTTTGCGTTTATTGCAAAATTGTCTTGTG
TAACTCACAATGACGTAAATTTTTTGTCATAGAAACACGTCTAATTTATATTGTTTGAAA
TTTTAAATTGCACGTGATGTGTTTCACATGATATTTTTATTCAAAACGTAGGAAGGTTGC
AAGGTTACGGTTTACGTGGCCTGTTTAGAGTCACGGTTGTACTATTAAGATTTTAACGCG
CACCGTGTTTGCGATTCACTTTTCAACACTCATTGTCACGTTGTTTTATTTGGTAATGTT
ACGGTTGCCGCTATTTTCAGTTAAATGAATTTATCTTGGTTTACTTAATGTAATTCAAGT
TTACGACTCTTCAAGTTAAATAGACAGTAAGCTAATTTGTAAATAATGATTTTTATTAAC
CAAATAAATGAGGATATTCGAAAAAAA
(3267 bp)

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