EntryView

Bombyx mori Assembled RNA-Seq Entry

Name

A_TrvaMG_comp26799_c0_seq2

Scaffold_id

NCBI non-redundant
(nr)

PREDICTED:_DE-cadherin_isoform_X1_[Papilio_polytes]

Ontology

GO:0000902	P	cell morphogenesis
GO:0001738	P	morphogenesis of a polarized epithelium
GO:0001745	P	compound eye morphogenesis
GO:0001748	P	insect visual primordium development
GO:0002009	P	morphogenesis of an epithelium
GO:0003151	P	outflow tract morphogenesis
GO:0004872	F	signaling receptor activity
GO:0005509	F	calcium ion binding
GO:0005515	F	protein binding
GO:0005886	C	plasma membrane
GO:0005887	C	integral component of plasma membrane
GO:0005912	C	adherens junction
GO:0005913	C	adherens junction
GO:0005914	C	spot adherens junction
GO:0005915	C	zonula adherens
GO:0005938	C	cell cortex
GO:0007155	P	cell adhesion
GO:0007156	P	homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007163	P	establishment or maintenance of cell polarity
GO:0007280	P	pole cell migration
GO:0007281	P	germ cell development
GO:0007297	P	ovarian follicle cell migration
GO:0007298	P	border follicle cell migration
GO:0007314	P	oocyte anterior/posterior axis specification
GO:0007370	P	ventral furrow formation
GO:0007379	P	segment specification
GO:0007399	P	nervous system development
GO:0007409	P	axonogenesis
GO:0007411	P	axon guidance
GO:0007420	P	brain development
GO:0007424	P	open tracheal system development
GO:0007435	P	salivary gland morphogenesis
GO:0007506	P	gonadal mesoderm development
GO:0007507	P	heart development
GO:0008013	F	beta-catenin binding
GO:0008105	P	protein localization
GO:0008258	P	head involution
GO:0008354	P	germ cell migration
GO:0008356	P	asymmetric cell division
GO:0008406	P	gonad development
GO:0010004	P	gastrulation involving germ band extension
GO:0016020	C	membrane
GO:0016021	C	integral component of membrane
GO:0016318	P	ommatidial rotation
GO:0016337	P	cell-cell adhesion
GO:0016339	P	calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0016342	C	catenin complex
GO:0017022	F	myosin binding
GO:0030031	P	cell projection assembly
GO:0030175	C	filopodium
GO:0030708	P	germarium-derived female germ-line cyst encapsulation
GO:0030720	P	oocyte localization involved in germarium-derived egg chamber formation
GO:0035019	P	somatic stem cell population maintenance
GO:0035099	P	hemocyte migration
GO:0035147	P	branch fusion, open tracheal system
GO:0035160	P	maintenance of epithelial integrity, open tracheal system
GO:0035212	P	cell competition in a multicellular organism
GO:0035262	P	gonad morphogenesis
GO:0036099	P	female germ-line stem cell population maintenance
GO:0042060	P	wound healing
GO:0042078	P	germ-line stem cell division
GO:0042803	F	protein homodimerization activity
GO:0043296	C	apical junction complex
GO:0044331	P	cell-cell adhesion mediated by cadherin
GO:0045176	P	apical protein localization
GO:0045186	P	zonula adherens assembly
GO:0046872	F	metal ion binding
GO:0048103	P	somatic stem cell division
GO:0048477	P	oogenesis
GO:0050832	P	defense response to fungus
GO:0050839	F	cell adhesion molecule binding
GO:0055037	C	recycling endosome
GO:0071907	P	determination of digestive tract left/right asymmetry
GO:0098730	P	male germline stem cell symmetric division

Transcript
Level

FPKM:3.94 TPM:3.32

ORF Entry

O_TrvaMG14192_3prime_partial:A_TrvaMG_comp26799_c0_seq2

Sequence
(Nucleotide)

TGACCGTCTTTCAGTTCGAGAGACATGAAATCTTGAACATCCAACAACGGATTGTGCTTC
AATGGTCCCATGTAAAATACTAAACTGTTCTTAGAATGCGAAGTGATGGTCAAAGTAACC
CTCCCTTCGTGACAAGCGGGGGGAGGGGGGTACATAGCCCAGCCGTTGCCATGGAAACCG
ATTGAGGTCTGCTCACAATGAGGTCCTGTGAGGCCTTCTGGACATTCGCATTTGTCGGCG
AATGGTGTTCCTCCATTCAAGCATATCAGCGGTTCCTGCACATCACAAGTACACTCAGAT
TCGACCCTAGCTGAGACGCCGACGAAGCTAGTAGTGTTGGTATACACTGATAATGGCACA
TTGTTCTTTATAAGCACGTTTCTGCACGAATCTTCACATTGTTCCTTCTCTATGAGACAT
TCGTCGATATGTATCATGTAAATGGGAGCTCTAAGTTCTTCTTCAAGCTTCTCTTGTATT
CCAGTGGCCATGCTATCAAGTTTTTCAGCAGGATAGTACGGAGATCCATGGGCTGAGAAC
CTGACATCCAGAAAAACGTCCTTCACAGTCGGTTTACTGAACACCGTAAACACGTCCACA
TTGTCTAGTGTTGTGTTGTAAAGTTGGGCTAAACGACGATGGAGTTTTTCCTTTTTACTG
GTACCATCTTCCTCAGGTATGATGAAGTCCTCAGCTGTGATGTTCACAAATCGTATAGAC
CCTGATTTATCCACTGCTTCTTCAGGTATCTCTTTGATGGTCACATTGACTGTGGCTTCG
ACCGAGTGGAAAGCCACTATTGGCTCATTTTCTTCTGTCACATTAAATCTTAACAAATAC
GTTCCATTAGGAGTTCCTTCCTTCATCGTGATCATGCCAGTGTTGCTATGGACATCAAAA
TACGGACTTCTCTGCTCGTAAGAGGGTAGCCACATGAACCTCTTGTCAGGAAGATCCCAG
TCATCTGGATCGTCAACGAAAACCCTGCCGATTTCTGTATCTGGTGCTTCGCCCTTATAA
TTGTAAACGAAGATATCACTATGGCCAGGTCCCATAGGATTGTCATTCCTGTCACCAATC
ACCACGTGGAGTACTGAGACTCCTGTCAAACGAGGAGTACCAGAATCTGTGATGGCTACT
GGTATCTTGTATTCTTTCTTCTGTTCTCTATCGAAGGACACGAGGGTTGAGAGGATGTTT
CCTTGTATTTGGAATTTGGTTCTAATATCAAAAGAAGCGGATTCGTTCAGTGCGAATGTG
AAGGGTGGGCCGTTTTCATTAGAATCGTAGTCTTTAGCTGTTAGGACCACAACTTGACCT
GGTGGTTCATTCTCGTACCAAATAACGGGCTGAGTATTGGTCAAGAACGGAGCATTATCG
TTAATATCAGTCAGTTCCAAAATAACTTCTGTGGTAGACCGAAGGCTATCAGAACCCAGT
CTGCCGCCATGATCAGCAGCCATAATCAGGAACTGCCATCTGGTAAACCCTGAAGGCTGG
TCCCGATCCAAGGGTTTGGTCAACCGAAGGCAACCGTCGTTGTCGATTTGTAAGAACTCC
TTTTGTTCATGTTTTACGAGGGAATATATTATGTTTTGGGGTGCATTTCGATCTTTTATA
TCTGGATCATAGGCTTCAACCTTAACAATACAGCCTTCGTAAAGTCGTTCTTCTTCGATA
GTTTTCGTATAATTCGTCACAAATACTGGAGGGTTATCGTTCAAATTCTCTATATTTATG
ATAACAACTGCATTGTCTTCGTATATACCATCGCAAGCTCGCACATCGAGTCTATAACTC
GTTATATTTTCGTAATCTAGTTCATTGTTCACTCTGATTTCACCGGTAAAATTTCTTATT
ACGAAGGCGTCGTATGTGTTTCCGGCTACAATACTGTATGTTACTATGGAAGCTGTATCA
ATATCTTTAGCATTCACAATAGTGACAAGTTCATTAATATTAGCATTCTCAGCAATCGAT
TCCGCTACATAAGTCTGTTGTGTGAAATGAGGTGGGTTGTCGTTTTTATCAGCAATTTCA
ATCAAAAACACTTGCTGCCCTGCATTATGTTTGCCCGGTATAAGAGCTGATTCAGAATTG
TCAGTAGCTATAATTTTAATATTGTAAAAACTTCTCTCTTCTCTGTCAAACATTTTTAGT
GTTGTAATGTTTCCTGTGATGCTGTCTATTGAGAATGGATCGGAAGGGTCTCCTAGTTCG
TAAGTGACTTGGTTGTTAGCTGCTGTGCCGTCAGCATCAAAAGCTCTAACTTGCATCACA
GGTGTGCCTATGTTTTCGTTTTCTAGAACGCTACCGGATCGAATTTCACTGAATATGGGT
ATGTTATCGTTGACGTCTTCAACTTCTATCTGGATTATTGTTTCTGCTGCTAATTTGTAG
TTGTTCTGTATTCTGACAGTAAGTGTGTAGTCAGTAATCTTTTCATAATCCAAATGATTA
CCCAATTTAACATAAGCAGTATCAGCTTCGGGCTCAAGAACAAAAGTGTGCCACTTATTC
GTTTGTTCTGTCTGCCCTTGAACTAACTCAAACTGTAATTTGTTTTCATCTGGTATATTT
GAAACAGCCCTTATTGTTGCTATTGGCGTGTTGAAATCTGCGTAATTTTCTTTTAATCTG
ATGGGTCCTTCTGGAACTTCTATGAAAGACGGGCTCTTCTTGTTAGATTCGACAACTTGT
ATGTCTAAACTTATGGAACTTTGTTGTTGGTCGACACCCTTATCTGTGACTATCGCACTC
AACTTGAACTTATACCCGGGTGGTTTATCAATAGTCTTATTTAAAAATATAACCCCGTTA
TCAGGGTCTATAATAAAGTAAGCTCCATCCGGTGAATTGGGATCCAGTTTGTAGTTGACT
ATAGAATTGTTTCCATCGTCTATATCTGTTGCTGATATCCTCATCACCTCTCTTCCACTT
GGCAGATCTTGAGGTACTGACTCCGAATACGAAACTTTGTCGAAGACTGGTGGATTATCA
TTGATATCCTCAATAATGATTTTGATGGTGCAAGCGTCGTCAAGTTGTGGCTGACCATTG
TCACTTGCTCTTACTGTTATATACGCTTCTTTCTCTCTGGACGGCTCGTCGTGATCAAAA
ATGTCTGCAGTAGTGATGTTTCCACTTGCCGGGTCGACGTGAAACCTTTCCTTTTCACCT
GGAGTGGAGACGAATTTGTACGTGACTGTTCCGCCCATTTCCGGCGGGTCTCGGTCTTCA
GCGTGTACCTGGAACACAAACGTTCCCACCGGCGCTTCTTCTTTGACCGTTGGCCTGTAG
TTCAGGCAGTTCGTAAACAGTGGTTTGTGGTTGTCCTTCACTGCCAGCTTCGGCGTGGAC
GCTGGTACATAGGCGGTGTGGATTGGCATGTAGCCATCTAAGTGTCTGGAATGCCTTAAT
CTTGTGACGTGGTGTTTGTAATCTCGAACTTTTGTATACTGCGCGGACGCCACTGCCGAG
AACAGTAGAAGAGCTACAAAAAACCCCATTTCACTCTTGCACGTGTACATTTTTCTTGAT
TTACTTCTTTCACCTCACTGTCGAAGACTTGTCACACTTTAAAATGCTCTTGTGGAGTCA
ACTAGACACTAAACAAGCACACTATCACAGAACTCAAACGCACATCCATTTGAAAAATGT
TCGTTCATCCGATAAGGTAGGTAACCACCTGGCACTCGTGGGACGAGTACCTTTGCAGGT
AAACGAGTAGGCCTATTAAGTTTCAACTTACTTAAAACTACTGTAATTACAACGTTTAAC
ACGAATTAAACACTAACAGACACGTAGAAAGCGGTAGTTCTGCACAAATATTTGTTTAAA
AACTTCATATTATTTCGTGGTTTAATTTCGAAGTTGCGAGCGAGATCGGGCGTGATGCGA
GAGACAACCACCCATCGC
(3918 bp)

- SilkBase 1999-2023 -

SilkBase

Bombyx mori Assembled RNA-Seq Entry

Bombyx mori

Bombyx mandarina

Trilocha varians

Ernolatia moorei

Samia ricini

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