SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaMG_comp26770_c0_seq1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_ubiquitin_carboxyl-terminal_hydrolase_10_[Bombyx_mori]
Ontology
GO:0002039 F p53 binding
GO:0004197 F cysteine-type endopeptidase activity
GO:0004843 F thiol-dependent deubiquitinase
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005769 C early endosome
GO:0006281 P DNA repair
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006914 P autophagy
GO:0006974 P cellular response to DNA damage stimulus
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0010506 P regulation of autophagy
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0030330 P DNA damage response, signal transduction by p53 class mediator
GO:0036459 F thiol-dependent deubiquitinase
GO:0044325 F transmembrane transporter binding
Transcript
Level		FPKM:4.58 TPM:3.86
ORF EntryO_TrvaMG14077_5prime_partial:A_TrvaMG_comp26770_c0_seq1
Sequence
(Nucleotide)
CCGCAATAGTTTTGACATGAACATTTCAGAAGTATCATCTGGTACGGGCACGACGAGAGT
TCCGACCGTGTCGAACAGCGTGGACAGTCTGTCGGGCGGCGAGGGCGAGATGGCGCCTCA
CTCGCCGGCGCGCAGCGGAGCCGGGCCACCGCCGCACCCGCCGCCCTACGCCCAGCCACC
GCCCACGTACCCGCCGCCACATGCCCAGTGGCCCGTCGCGCCGCCCAACGTCTACGTTAG
CCAGGTCACCGCTAATGTAAACGTGCACGGTTACATGGGCCAGTACTACCAGCCGCCCAC
GCCGCAGTATGTCCCGCCGACACAGGAACGCGCGCCACGCACACATCGACGCGACCGTCG
CGGCAAACGGCAGCCATCTCCCCCGTCACATCAACCCCAACCCTACTATTTGCAGTACCC
ACAGTACTATCCAGCAGCTCAGGCGCAGGGTGCTCCACTTTACCATCTGCCCATATATCA
ACCCTTGGTGTATGGGCCATATGCCTACCCTTCATATTACCCAGAGTACCCAATGCCTGT
AGAGGGTGATGGAGAAAAGGGGCCTGAAGATTATCCACCTGAAGTGGTTATGGAACAAGA
GGCAGTTGATGCCTATTACGCCAGTGCACACTACGCTCCACCTTACGGCCCACCAGTAGA
AGGAGCCATGGAGTATGTGCCGCCACTGTACTTGCCATCGCCGCACCATCCACCGCCATT
ACAGCCTCCTCCGCACCACCATCCGACCCCACATCAGTTTAATGTTCACGCGAAGAATTT
CGTACAAGGACAAGGCAGGAACTACACGCCTCCTGATAATAAACCACAGGAACGACGCAC
ACCACCGACGGCAACTGCAACCGCTTCAGCAAACGTCGACGGACTCCCTATTAAAGATCT
CAAAATCGCAAACAAAGGACCCAGCAGCCCCAAACAAATTGAAAAACCTATCGAAACCAA
CCAAGTCAAGCCAATTCCTGCAATTGTTGATAAAGTTGTCCAGAAGATTGATCCAAAACA
AGTCACGCCAATAAATGAGAAAATCGAAATTCCCAACATGAATCAGGTTCAATCAGTTGC
AAGGACTTTCCTGCCACAAACTTCAGCAGCTGCCTCAACTGTCAAGATCCCACCTACCAC
AAATAAAGCGGCCAAGGGACCATCTGCCCCATTCTCGAGTGGAAAACAACCTCCGAAACC
AACTACGCCACAAACAGTTGTACCAATTCAGCATACTGTGTCGACTCCGAAAGCGCCATT
CGGCAACAGGCAGAAACGTGACGGCCCACCAAACCGATCTCCTTCTAATGACGTCGCTGA
TGAAAGGTCTGTTGTCACAGAACACATAAAGAGGGAACCACCTCTACCTCCAAGTAAAGC
GCCAATGCCGATATCTATTACGCTACATTCTGCTGGACAGCCGCTGATTGTGACTAGTAA
AGCTCCTTTTGGCCATTCGAGGAAGACAAGTGGTGCACCGGAACCCCCTCCAGTGCCACA
ACCCCCGCCGCCAGCGCCGACCGCTTCAGATTTCCCACCTCCACCAACACCGCGGAATCG
CACGGAACCCCCGCCGCCTGTAGTTCAGCCCCAACCACAGCCGGCTCCAGGGAAATCTTG
GGCGAGTTTGTTCTCATCAAAGCCTAGTGTACCTACACCTGCGCCCGTCACTGTGACAGC
TCCCGTTGTTGAAGAATCTGGGAGCCCGACATCTACTACGCCACCGGTCGCCCCAAACTT
AAAGCCTGTCGCTAAAGTGCCCCCATTTGATGCCTCTCCTTTCGCTGGTGTTGTCCCTGA
GAAAAACATGGTTTCCGCAGCCGTTTCATCTGTGTCGTATTCTGAGAAGACATCAGTCAA
TTCTGGTAGTGCTCAGGCAGCCCCAACTATCAGTCCCAAGCCAACAGCCCAGCCTCAAAA
CGAGCTACGTGAAGTTCCAATACAACGTGATTCTACACCGGCAGTATTACCGCAGCCATC
GCCTTTTAGCGACGACCCCAATTCGTATCGGATGGGAGAGTTTTTGACTAAATATCAGTT
GGACCACCGTCCAGTCGCAATCTTGCCTCGTGGTCTCACTAATCGCTCCAACTATTGCTA
TGTGAACGCAATACTGCAAGCGTTGATCGCGTGCCCGCCGTTCTACAACTTACTCAAAGC
TCTACCGTACCAAACTCGTCGCGGTAAATCTAGCACGCCAGTTATTGATTCTATGGTGGA
ACTTTGCTACGAATTCAGCGCGAACGGTACAACGACGACCACAAACGGTCGTGGCCGCGG
TACCAGCGCTAACGTAGCCAACACCGCTCCTCTGGTACCCGGCGCTCCGCCACTCGAAGG
AGGCGCCGGTCTCAGGGTGTTACGGGCATTAAGACCCTTCCCAGGGTCACAGGATGGAAG
GCAAGAAGATGCAGAAGAATTCCTTGGATGTCTACTGAACTCGCTTAATGATGAAATGCT
TGAGTTGATGAAGTTAGTTGAACCAGATGAACCGAAAGAAACAAACTCTCAACCCAACGG
TATTGTTACTGCTGATCAATCACCTGAAGAAGAAGATGATGATGATGAATGGAAGGTAAT
GGGTCCCCGTAACCGCGGCGCCGTGGAGCGTCGTTGGGCCGCGCGTCGCACGCCCGTCGC
CGATATATTCCGCGGTCGAACTCGCCTGCGTCTTCATCGAGCGCATCATCATGACGTCAC
CGACGCTGTACAACCTTTCTTTACGCTACAACTTGATATTGAGCGTGCAACAAGTGTAAA
AGAGGCTTTAGAATTATTGGCTGGTAAAGACACTTTGGAAGGAGTCAATGATGCATGGCA
ACAGTTGGCATTGGAAGAACTTCCAGTCACTTTGCTGCTGCATCTCAAGTGTTTCCAATT
TGACCAGGATGGGCATACCGCTAAGATTGTCAAGAACATTGATTTCCCTGTTGACTTGAA
GATTGATCCCAAAATAATGTCATCAAAGCCAAAGTACACAACGAAGCAACGTTTGTACAA
GTTGTTTGCAGTCGTGTATCATGAAGGAGTTGAAGCTGTTAAAGGCCATTACCTAACAGA
CACTTTCCATGGACAAGCTGGATGGATCAGATACGATGACTCCACTGTTACTCAAGTGAC
AGATGTTCAAGTACTGAAACCGAAGCCTCCAAGAATGCCATACTTGTTAATGTATAGGCG
ACACGATACTCTTCTGCCACATCGACCAGTGAAGCCTGAATGAGCAGAGTTTACGTTCGC
TCATTTCTACTTCCGAAGTATCAACATCCACGGGCATTTTTGGTAAAACCAATGTGTGCT
AAGAAGTCATGAGTGAATTTGTGGACTGTTTCAGTGAGCAACTTATAGTGCGGTGAAGTT
AATATGACGTTGTAAAGTGAAAGTGTTGTGTAATAACTATGGCTTTTTGATGTCAGTTTA
TGGGTGGAATGTTTGAATGTAAATTTATAACTGACCATGGTTACTGAATCCTATATCTCG
GGCACTAATTTATGTGAATTTGGGCTGGAAAATTCGTTGAAATACTATTTTAAAATTGTA
AAACCATGGGGATATCTTTACGAAAATCTTTTTATACTTTGTGCCTTGTAATTCAACGAA
CCATATTGAGTACCCAAGTTTTGTAAATGTTTATATTCTTTAGGTAGTTTATATCTTAAC
TAAACATGTATAAACAACTGAAT
(3683 bp)

- SilkBase 1999-2023 -