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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaMG_comp26750_c1_seq8
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_splicing_factor_3B_subunit_3_isoform_X1_[Amyelois_transitella]
Ontology
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005689 C U12-type spliceosomal complex
GO:0005730 C nucleolus
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0042177 P negative regulation of protein catabolic process
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:12.79 TPM:10.77
ORF EntryO_TrvaMG13966_complete:A_TrvaMG_comp26750_c1_seq8
Sequence
(Nucleotide)
TTTTTTTTCTTATCACATATTTTATTTTATAGTAATCACAAAGACTTATAAATTAAAAGG
CATATCTAGTTCGGATGTCTTCAAGTTTCTTTGAGACTTCGGCGGGAGTACGTTCCAGGT
CACCTGCGATTGCTTTCTGTTTTCCTGGTTCTAAAGAGTTAAACTGTTCACAGAGATCTC
CATCTATCACATTCTTAACTGGGTAGTAGTAACTTCTAAATGATAAATGATCACGTCCAC
ATAATGGCGAATTTTCACTTCTCATGTGCATTTCCAAATGTTGGAAGAAATCATGGTCTT
CTCTCGAAGTAAATGGTAGTAAAACACCAAGAGATCCACTGACGGTCGCATATAAGAGAG
CTTCAGAACCTCCAGGAATCAAGGTGGCTCTTTGTAGAGAGGTTATTGTTTCACCTATGT
GGAAATTAACTACTATGTCTCCTTTTTGTGAAGCACCATTGAGTAAACCTCTGTCCCAAA
GTGCTTTATTTCCAGTTGGATCTTCATCTACATCGTCGCTAACAGATTGTGGTAGGCGCA
TGATGGCTACGTTGCCGAATTTGTCAGCTACTGCTATCGTATCGTAATCCAGTACACAAC
TGTTTGTAATCCATCTTGGATTTGTGTCGTCGGCAAAAATAATCAACTGGTTCTCACGTT
TCTTATGTTTAACGCAAAATACGGATTCTTGAACATCAGATACAAAGATTCTTTGACCAA
TTGTTTTTATATCAGCTATTAAATTCGGGATGTGTCTGTTTTCGCATTTACGTAAAAGTT
TTCGTCTTCCAATGTCATACAGTCTTAACATACGTCCGACACCAACCAGAAGTTTACCAT
TGAAAGCTGCCAATGCACCTGGATACTCATCCACTGGGGTTTTATGAACTAGCTCCAATT
TCCCAGTGTTACCATAGATCTTATAGACATGTAAACTGCCTTCCGTACAAGATCGTGGCG
ACAAAATCAAATCCTTAGCAACGCCTACAACTAAATGTGGTTGCGCGTGTTCACCATGAG
CCATCCATCTTACAATACATAGTGACACCGCTGCTTCATTTTGTTCCAGCGGAACTTTGA
ACAACGTGTTTGGTTGACCACCTCCTATACCCATGTCAACTACTCGAATCTGTGATGCCC
ACATACCTGGCCCAGCTTTAGGTGATGAGAAAATATTTTCAGGTAACGTATCAGATAAGA
ATGCATCTGCCATCTCATTAGCAAGTTGTTGTTCCTCTGGCGCACCCCCCGCTGCTGCTT
CACGCATTTCCTGAGCCATTTGAATTCTTCTGTGTTTTTTCATATCTTCCGTGTAGGCAT
TGTGATCTGTTTCAAGAACTATAATGTGATTATTCTCAGAATTGATGATGAATTTTCTTG
GTGTATATTCCAATGGTACAAATGTTTGATTGAAAACTGCTCCTAACTTTTCCAATGCTA
AAATCCTTAGTGTATTTGATGAGATAGCTACAATACCTTCAGTACATTGTTCTGAACTAA
AGCCTGCTGCATATTCAAGACATTCATAAGACAATGGGGTGAGATGGAAACGATTCTGAT
AATGATATCCAAGCCATGTTCTGGATGACACCGCCAAGACAGCTTCAGCAGCTTGCACTC
TTACTTTGAACAACTTGACAGGTCTTGATCCTAAGTATCTAGTTCTAGTGTCTGCTAAAT
CACCACTTACAGAGTCCAAGGTAGTTCGTAGAAGGACTCCATTACTCAAGCCAATGTTTA
AGTGCAATGTTGATTTAGCACCTGATTCAAACGGTTGATCAACTATACACAAAGACTCTG
CACCAGCAGGCAAAGCTTGCATTGAACGTGGAGACAAACAGTCCGCAGGATCCAAAGAGA
TAATTCTGACAGTGTTGTCATTAAGGCCAACTGCTAAAAACCATGCTCTCTGTTCACCTA
CAGCCACTGATCCTAGCGCCATACAACAAACATCTGATGACAATTTCTTTCTTTCTGTGT
ATTCATTGAGTTGTCCAGTAGGGTCCATTTCGAAATATACCAACTCTCCCCCAGTCAGGG
CAATGACGACTTGTCTTTGGTTGACAGCACATCTTACAATAGACTTCTTTCCCGGAGCTT
TCCATTCATTGACACGTTTGTCAGCTCGAATATGTCTTATACCATCAGGATATACTTGAA
CCAAAGCGTCATTGCCCATTGCATGACAACTAAGGGTAGGAGTTGTTCCCAAAAAACCAG
AATCTGTTACTTCTTCTACAGTTTCGCCAATAGAGAGCACAAGGGTGGCATTAACGAATG
ACACAATGATGTAAGAGTCATATTCCTCTGTTAGTCATGCGAAGTCTGTTCATCTGCCGA
TAGTAGATTCATCTTTGTTCCGCCTGACAGTCCAAACAGCATTTGGAGATCCTGGAAGTT
CTGACACAGCCATTTCTGCCACTTCAAGACCATGTCTCAAGGCTCTGAGGGAAGACCTTG
ATCCTCTACCACATGCCAAATATACTTGGGGAGTATCCTCACCAGTTAAGTCTGCTACAT
GGCATGCTAATATTGGTGATAAAGAGTCCATTTCATCAACCAACACCAAATTTCTCAGTG
GTCTTGGTGCAAAAAAGAATGTATCTCCTTCTTCCAAAGGCATAGCAGAGCTGAATTCGG
GTTCATCATCTTCATCACCCAAATGGGCAATCTGATATAAATAGTGGTTGCCAAATTCAC
ATGCTACAAACAGGAATCCAGTTTTCAGGACACACATTGATGTAGCCACTGGTACTGTGT
CAAAATATTTAAGTTTTATTTCTGTGACCATATCTTCATCAGTTTCTATGGTGATTTTAA
AAATGTCGCCTTGTTCAGTTTGTGCTAAGAAGAAAAACATTGACTTGGTTTTGTGTGTGG
CAGAACACACAAAGATCATTCCTCTTTCTGGATCATCCAAGTCATTGCGTCTGCGAGGTA
TGGGACATCTGATATCATGCTGGTCACCCAAATTTTTGTATGTGAGATAATTCTCAGAGC
AAATAAGAACTCCAGACGGACCATCATTTCCACCGGGTACAGTTATAAGGAAATTGGCAT
GTTCTTCCAAAGGCTCAGAGTACTTTCTAACAACATGATTTAATCCAAGATCTAATTCAT
AAAAAGTTAAAGTCTGTTGAGTTTTTTGTGCAGCTTCACCTGTAGGGTCTGAATCAGCTT
CTTCATAGTCAATCTCCAGACAAGCAAACATGGGATTCTCAAATCCCACATCTACACCGA
CCATGTGATAAACAAGAGTATTGGATTTGTGAGCTTCAAGTGGTGATGATATAGTCAACC
GAGCTTCTGCATCTCTGTTTAAAATGTACACTAATTTTTGTTTCTCAATTGCACCGATCA
TAACAGCTCTGCCTTTTGGGTCAATAGACAAATATTGGCCAGGAACTATCCTCCTGCAAC
CAGATTTACCAAAGGTCTCTTGATGAACTTTTTCTAAAATATTCTTTGCTGGGATGTACT
CCAAAATAACAATACGACCAGAATCAGAACCAACCACAATGTAATCTTTTGTACCTCCTG
TGAGACGAAATGCCATAATAGATCGAACTACACCGAATATTTCAACCTTCATCAAGGTGT
GCACTTTTCCGGTGTTAGGATCCGGCCGCAGCAACTCAAGAATTTTACCACGTGATATAA
TTATCTCTTGTTGTTTTGTACCGGAAAAATTGCCGTGAACGGCATGAGTAATGGCCGAGG
ACCCTTGTAAGGTCAGATTGTAAAGATACATTGCGGTTTTTGTCTTATCCTATACCTTCA
AATAAATGTAGTTGATGGCCGCAATGCGGCTCGATGTAATATTTTGTATTCTCAGTCAAA
CCGGCGCAGTAGGACGCCGGCAAAATGGCGGAATGTGAGCACGCCATCGAGCATCGGTTT
CACGG
(3905 bp)

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