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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaMG_comp26576_c0_seq1
Scaffold_id
NCBI non-redundant
(nr)		hypothetical_protein_AB894_15365,_partial_[Piscirickettsia_salmonis_LF-89_=_ATCC_VR-1361]
Ontology
GO:0000166 F nucleotide binding
GO:0000943 C retrotransposon nucleocapsid
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0004540 F ribonuclease activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0019076 P viral release from host cell
GO:0032197 P transposition, RNA-mediated
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
Transcript
Level		FPKM:7.25 TPM:6.10
ORF EntryO_TrvaMG13180_3prime_partial:A_TrvaMG_comp26576_c0_seq1
Sequence
(Nucleotide)
CAAAATTTTAATACAACGATGATGGCATTAAATATTAATGTAATTGTTGATTTCCTTCAA
CATAGAATACAGGATGCAAGATAATTTTATCAAGAAGAAAATATTCCACTGCGAATTAAA
AACATTCATTAACAAAAATAATAAATTTGAGACTATTTTTAAATCTTGCATCCAGTAAGA
TGTATTAAGTTTATTCAATAATAAAAATATAGAGTAAGGTGCAAACGCGCCTTCAAGAAA
ATAAACAGGCCTCGAAGGGGCGTGGCCACGTGACGTCATCTATATCGTGCGAGAGAAGGG
AGCTGGTGGGGCACAGTTCCACGAGAGCGCGGGCGCTGGCGGAACTTACTCACTTCTCTA
CGATCGTTAGACATAGGCGGACGTTGTTACCCCGCGGTCACTTATAATTATCGTGTAATT
GTTTGTAATTAGTTATTCATTATCATTTAAATGTAATTTCGTGTTATTATTAAAATTGTA
GAATTGTGTTATCTTTTTTTTATTTAAATTTAGTGTTCGGTTTATAATCTCAGAAGTGGG
ATCGATATTCCACTCCGCGCTCGTTTCGAATAGGAGTGTTAAGTATTTTTGAAAATGACT
GATAAAAGTTCTAAAAAGAATCGTACGACTATTTCCGGTCTAGAACAACAATTACAAATT
ATGTTAAATCGTTTAAATGCGTTGGAAGAGAATAATTTAAATTTAAATAATTCGGTTGGA
AACGACGAGATTACCTGTCGCGACATAGTGGCGCCGCCCGACGAGGCGCGGTCGTTATCG
CCGCCAGTAATTAGCGCCGGTCCGTCTAGCACGCCTAACTTGTACGAACCTGTTCCGTCT
ACCAGTTCTAATAATTTGACAAATACTGAATTTATTATGAGTGAAGTGACCGATAAACTC
GTGAGTGCTATTAATGGTATACCGACGCGATCTACGAACATTTTCATTTCAAACTTCGAC
CCGGGTTTACACGATTTTGACGCGTGGTGTAGTGAAGTAGATCATGCACGGGTTTCAAAT
CGATGGGACGATCGAGAATGCCTTGCTCGCGTCGGCAACTGTCTAAAAGGTGACGCGAAA
TTGTGGCTAAACGAGTGGGTTAGTAGTGACCGCGGATGGACGAACTTCAAGCGAGAATTT
AAGTCTCTTTGCCCGTACCGGTTAGACATAGCTAATATTTTATTCGACGTTATGAAAACT
AGTTCTGATAACTACCCTACATACGCAGAATATGCTAGGCGTTCTTTATTGAGATTACGT
ATCGTTCGCGGTTTGAGTGACGAATTGATTGCGGCTATTATCATACGCGGTATTACTGAT
TCTCAAGTTCGTGCAGCTGCTACTAATGCAAACCTCCTCCCGGGTGACGTAGTAAATTTT
CTATCGACCTACGTTAAGTTTAATAAAATCGTGCCACCTCATACACGTACCGTTCCGCGA
AGGTTTGAATCGTACCCACGTAAACGAGAACGCAACGATTCAAAGATTAGATGCTTCTCA
TGCAACGCGTATGGACATAGACAAGACGTTTGCACAAAACGCGTAAAAACCGAAAATAAC
GTAAATTCCTTTACGCGTAAGACGCTACGCGGTCCACCCGTACACGAGTCAGTGCCGTGC
TCTTTTTGCAAAAAGCTAGGTCACCGGGTAGAAGATTGTTTCGCGAAACAACGGGCTGAG
TCACAGGGCAGATCGAACGTTAATTTCTGTATTAGACTAGTTAACAATTGTGTGAACGAT
GACGTCATTACCGCGGCTATACAGGGCGTTCCGGTAGACGTTCTGATCGATAGTGGATCG
ACCATATCCTTAATATCTGAACGTGTAGCAAAACATTTACATTGTACACAAACACCATCA
TTTCGGGTCTTAAGAGGAATAGGCAGTCAGGAAGTACAGACGTCGTTCCGAACAACGTTA
ACTGTAGAATTCAACGAAATTAGTCTTGAAATAGATTTTCACGTTGTTTCTGATAATTAT
TTGAGTACCCCCGTTATCATCGGAACTGATGTTTTGAATAGAGATGGTGTAACATATACT
AGAACGCGCGGTATGCAACGTCTTACAAAAATCGACAAGGTTCTAACAGTCTGTTCCGAT
TCATCTAGTCTAGAAATTAGCACGCCATTGGTAGGAGCCGATAAAGAAAAGCTTATGTCG
ATTATAAAGAACTTCTCGAAGTTTCTGATAGTAGGGACGGCCAGTACTACGGTACGAACT
GGTATGATGCACATTCGACTACATGATAAAACCCCTGTCGTCTACAGGCCTTATAAGATG
TCACATGACGAGAAAATGCGTGTTAGGGAGATAGTTAAGGAACTGTTAGACAAAAATATA
ATCCGGGAGTCTGAATCGGAATACTCGAGTCCAATATTACTGGTCAAGAAAAAGGATGGT
AGTGATAGGTTATGTGTAGATTTCAGGGCTTTGAATTCGAAAACTATTAAAGATCATTAC
CCGTTACCCCTGATTGACGATCACATAGATAGATTAGGTAAGGCAAGATACTTTACCAGC
TTAGATATGGCCACGGGATTCCATCAAATCAAACTACATCCTGAGTCGGTCCCACTTACA
GGATTTGTGACGCCGGAAGCACATTACGAGTACTTGAAAACCCCATATGGACTCTCAAAC
GCACCTATAGTTTACCAGAGAATAATATCTAACACCTTACGGTCATTTATAGACAGTGGT
AAGGCCTGTGTGTATATTGATGATGTTCTTTTACCTAGCACTACTATCGATGCAGGACTG
GAAACTCTCAAGGAAGTCTTGGACACCTTAACAAAAGCAGGTTTCTCTATTAACTTGAAA
AAGTGTAAGTTCCTTACCAGTGAAATTGAGTACCTAGGTCGAACCATAAGTAACGGTCAG
GTTAGGCCGAGCTTGCATAAGGTCGAAGCTTTAACTAATGCGAGGGTGCCGAATAACGTC
AAGGAGGTAAGACAGTTCCTAGGTCTCGCAGGTTACTTCAGACGGTACATACCTGGCTAC
TCGCAGAAGACAGCGTGCATAGCAAATCTTACACGTAAAAATGTTCAGTTTGAGTGGGGC
GAGAGACAAGAAAACGTCCGCAAGGATATCATCGATCGTTTGACTAATTCACCGGTACTA
GCCATTTTTGACCCCGTTCTCTCTACAGAACTCCACACCGATGCTTCAGCTCTGGGGTAT
GGAGCCGTTCTACTACAGACTCAAGGCTGCGGAAACAAATTGCCTATCGCTTATTTTAGT
AAAGTAACTCAGGGTGCCGAGCCACGATACCATTCATACGAATTGGAGACGTTGGCAGTG
GTCAAGGCGTTGCAACATTTTCGACATTATTTAATAGGTACTAAATTCAAAATTATAACT
GATTGCAACGCTTTGAAACTGACCCAACGCAAGAAGGATCTGCTGCCGAGGGTTGCTCGC
TGGTGGATGTATTTACAGGATTACGATTTCGACCTTGAGTACCGGAAGGGGACTGCGTTA
TCTCATGCCGACTATCTAAGCCGAAATCCAGTCAATTTATGCCAAGTTCAAAAACCACTC
AATTGGGCACAGATAGCGCAGGCCGCGGATGAAGAAACTCAACAACTACTTCAAAAACTT
GTTGAGGGAAGTCTTGATCCTTCAAGGTACATCAAACGTAATGACGTTTTGTATTATAAG
ATGGACGTGATTGGTGAACAATCACGATTCCTTTGTTACATACCAAAAGGTCACCGTCTC
AGCCTTTTACGCGTTTTCCATGACGAACACCAACATATCGGTATTGACAAAACGATCGAT
TTAATTTTAAAACATTTTTGGTTTCCGAAATTGAGACAATTTGTGAGAAAGTACATACAG
CATTGTGTTGTGTGTCTGTCTCACAAAAAGATCCCTCGACAACCATTTCAGCCCATCGAG
TCCTGGACAAAACCTTCGACGCCTTTCAATACCGTTCACACTGATGCATTGGGCCCTCTG
CCAAATTCGAATGGTTTTAAGTATGTAATTATCATTGTCGACGCCTATACTAAGTATTGC
TTGTTATACCCAATCAAAAAACAAGACGCGGACGAATTAAAACGAACTTTCGAAAACGCA
ATTTCTCTTTTTGGATCACCTGAGCTAATAGTCGCGGATAGAGGTAGGATGTATGAGAGT
GCTACATTTGTTAGTTGGATTAAGAAACTAGGTTGTAAGATTCATTTCATAACTCCTGAA
ATGCATCAAAGTAATGGTCAAGTTGACCGTTACTGACGCACGATCATGAATATGATCCGC
GTTGAGTCAAATTTTCGACAACAAAACTGGTCTTCTATACTATGGAAGGTACAGCTCACC
TTGAACATTACTGTACAAAAATCTGTTAAATGTTCGCCTATGAATTTGTTAATTGGCAGT
GATGGAGCAACGCCCGTGATAAGATCTTTGGTTCGTGATATCGCCTTCGAACCATCTAAC
CCAAATCGTGAGACAATACGTGAGTTAGCCCGACAGCGCGCTTCCGAGCTATTGGAGGAG
AATCGGATCCGGCAGGACGCCCGCGTCAATTTAAAGCGCAAAGAATTGACCAAGTACGAA
ATTGGAAACATTGTATTCGTGCGCAAAGCAAGCCAAGCTACGGGCAAGCTGGACTCTGGG
ATGCGAGGTCCATATAGAGTATGCAACACTCTGCCGCATGGGCGGTATGAACTAAAGTTG
GTGACTGGTTCTTATGGCAAGACCACACAAGCTGCAGCAGAATACATGACTCTCTGGCGT
GGGGAGTGGAACCCCGATGTGTGCAAGGCATTCTTCGAGACCGATGACGAAACTGAAGAT
GACATATCTAATAATCAACCGTGTGAGACGGGACGCCGAGCTGTCAGCACAGATACTTCC
AACTCAGAGTCACTACTCCAAGATATGGACCACCGCCACCAAGATCCTACTCCTCAAGCG
GGCGAGGGCGCGCCGCCGTCAGGAGAAGCC
(4950 bp)

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