SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaMG_comp26495_c0_seq1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_protein_virilizer_isoform_X5_[Bombyx_mori]
Ontology
GO:0000375 P RNA splicing, via transesterification reactions
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0007275 P multicellular organism development
GO:0007298 P border follicle cell migration
GO:0007530 P sex determination
GO:0007539 P primary sex determination, soma
GO:0007549 P dosage compensation
GO:0008380 P RNA splicing
GO:0016021 C integral component of membrane
GO:0048024 P regulation of mRNA splicing, via spliceosome
Transcript
Level		FPKM:4.69 TPM:3.95
ORF EntryO_TrvaMG12881_5prime_partial:A_TrvaMG_comp26495_c0_seq1
Sequence
(Nucleotide)
TTTAAAATTCATAAACTGATATATTATAAAGTGTATAGTTCAACGCATGAAGTTCCTGTG
TCTCGGTCCACGCTGCATCCTTCCCCCACTCCATCCGCCCACACCCCCACCCATCATGTA
CTGCGAGGAGGGCGGGAAATGTCCAAAATGTGAAGCTCCCATTTCCCAGGCGCCGCGACC
CCTTATGTGCCTGTAGTGCGAGTGTACGGGCGCGGCCGATGCGAAGCGACCCCGGTCCGA
CCCGCGACGAGCACCGCGACTGTTGTTGTACGTGTGGTGCAGGGCGGTGAAGTCGTCGAC
GTGCAGACTGGGCGGGCGCGACGTGTTGGGCGGGCGGCAGCGGAACGAGTCCGCGCCCTC
CGCCCCGCGACCCCGCCCCACGCGGACTCCGCGATCCACGGCGGGTCTCTTGTGGTCCGC
GCTGGGCTCGGCGGCGGCGTCGAGACAGCCGGCCAGCCGTCGCACGGCGCCCGCCACGCC
CTCGCCCCCCAGCGACAGGTAGCTGTTGGCCAGCTCCATGATGTCACACGGCACCAATTC
ATGATCATTAACGTAATCCTCCCCGCTGATGGAAGGTATATTCAGCCAGTAGCTAGTAGT
GAGCCTCTCGTCATTAGGCTCTCCTATACTGTACACGGTTCTGGTGGAAAACTGTACCAC
CAGCGTGTCGGGGCCTGGCTGCGGGGCCTCGGGGACCTCGGGCGCGGGCGACCCGGGCTC
CGGCAGCTTCTGGAGGTAGCCTGTTAGGAACCTGACTGCTGAGGCGTCTTCTTCTGCGTT
GCGTTCCTTCAAAACATTCTCCAAACTCATAATGGGATGATCTTCAGCCCCCGCAGTGTA
GCCCAGCATGTCGGCCATCTCTACCGGCGTCAACACGGACTTCCGAACTACGGGACCACC
TTCACCCTCCTCACCCTTCAGGATCCTGATCAGATCCAAGTACAAACTCAAGCACTCTGC
CTTTTCTTCCCCAGGACCTTCCACGGCCCATTTGAAAAACGTTCCTAAAGCCTCCCGCTT
TTTTGTAACAAATTTCCTGAACTGCTGGAACCCGTATTCGTGGTCGGTTAAAACGAAATA
TGCTCGTAGAATTGATTGGGCTACGGAGCATGTTTTGGTAGTGGATTCTAAGCAATCGGC
TGTGGAGTCAAGAAATTGTGCCAGCGCTTCTTTATTTGGTAGAGAATTCGCGAGTAGATT
ATCTGGGTTGGACGATACTGGCGTCAGTGTGATTTCTATATCACAGAACGCCGCTAAGAT
GTGAGCTGCAAACTCTTGCGCGGTTGAATGATCAGTGGAGCCGTTCGATAGAGTGAGAAC
TCCGCACAAAGCCGCCTGTATCTCTGCTGATTTAGGTCCTCCAGTGTTCAAAGCGTGAAG
GACAGCGCATTTGACGGGCGCATGCGACACCAGACATGTTAAGAAACCTAGTACCCTAGC
TGAACTCGCTGTAGCAGGTTCCTCAGGCTTTATTTCCTTCGTGACAGCTCCGACTGCAGC
ATTAGCGACGGTAGCTGCTGTGTTGGGAGCTAGATCAGCTATTTGAACACACACACGTCT
CAGCATGTGTACGACCGGACGATATGTGGACATGCATATAATCTGGATCATGTCCGTCAG
ATCATTGGTCAGCGCGTGCAAATGAGCTGACCACAACCGGCGTTCGTTACAAGCGTCTTC
TAATTCCCTTGGAGTTGGTGGAGTCTTTGCTTGCATTGGTAAAGGTAAAGGCAGCAGTTC
CGAGAACACTAACAACCCGGGAACGAAAGTGTAAGGAGCTGTCATAGTGTATTGGATGAC
TTCAGAACATAGTGACGTCCATGGTCCTCGACGTATGGAGTCACCATCATTAGCGTCGTC
AGCGATAGGCTGAGCGTAGGCAAGTAAAGCTTTCACTGCAGCCTCAGCGGCTTTCGCTGC
TGTTCTGTATCCAACACAACCAACAGGAAACGACTTGGCAATACCATAAGTTTTTAATAA
CACTGGAGCAGCAGTTAGATCTCTAAATCGTGGTCCCCGACAACGCACTACTCTTGCCAA
CATCTCGTCCAACAATCTCAAACATGGAACCAATATTTGAGCCAATTGTAACCCCTTTAT
TGAAGCAAAGAATGACGTGTGCATGCTAGGTTGGTCGAAATGTGTGGCCAACTTATCAAG
GATTCCTGCCAAGTGCGCTACTCCATCTAAAGAGAACAGCTGTAATACGTTGTATTTATA
TTTAAGTTCAACGTATTCCTCAACAGCTGATTCGTTGGCTATAGCGACGTTAGATTCGTA
GTCAGATATGCTGAAATGCCTCAAGATGCGTAGACAAGTTGTAATTTCTCCGGGCAAGTC
CGGTGCATGCTCAGAATTCGTTTTTAAGATCTCGACACATTCAGCTAAATCGTCTCCATT
CAAGAGGCTCATGTTTTCGATGGGTTTCAAATACGGTATGACCTCTTGAAGTACACTGGA
GACGCTGGGCTCGAACCTATCGTGATCTTTCGACACGTTTATAAGTCTTTGTCCGTATTT
CCTCAAAAACGTTACATTAGCTGAGAATCTGACTGCAGACACGATC
(2566 bp)

- SilkBase 1999-2023 -