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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaMG_comp26474_c0_seq1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_pre-mRNA-processing_factor_6_[Amyelois_transitella]
Ontology
GO:0000244 P spliceosomal tri-snRNP complex assembly
GO:0000398 P mRNA splicing, via spliceosome
GO:0003713 F transcription coactivator activity
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005682 C U5 snRNP
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0006403 P RNA localization
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0016607 C nuclear speck
GO:0043021 F ribonucleoprotein complex binding
GO:0044822 F RNA binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046540 C U4/U6 x U5 tri-snRNP complex
GO:0050681 F androgen receptor binding
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:0.27 TPM:0.23
ORF EntryO_TrvaMG12810_complete:A_TrvaMG_comp26474_c0_seq1
Sequence
(Nucleotide)
TCTCTGAACGGCCGAACTTTAACACTTAAATACATCCCTATTGAAATACTTTTACAACGG
AAGAGAGTTATTGTTATATATTTCAAATTACCGTTACTCAGTATACCATACTTAACAATA
GTTAGCATTTTAATCGTAAAGTATAATTAATACTTTACTATCTAACATTGACTTATGCTC
ATTAGTGTTAAATGCATTTCTTAACGTCATAACGATCGTATTTTTAATTAACTACAAAAA
GTCAATTTTCGTGTTAATCCTTTTTACCTAAAACTTGTGTTATTTTTCCGTCATTAAAAT
TAAGTAGGCACAGGTAAGTTTTTAGCAACTAGTAACAGTATCTGATCGGTGCTAAAACAC
CAGTTGACGATATCTTTAGATACTTTGCACCAGTTCTCTCCGTGGTGAGGTTCAGCGGCC
CTACACCGTGTCTTAACGTCCTCCTGTTGTTGTTCGTTTCCATGGAGGAGCTCAAACTTG
TAGAAATAAGCCCAAGCGTCACCGAGATCCGGGTCGATTTTTACCGTTCGGTTGAACCAT
TCCCTGCATTTGTTTAGTTTCCGTTCCGTCCAGAAAAGTTGCGAGACGGCGAGGAGCACA
TGAGCGTCGTGTTCGCATTTCTTCAATGCATCCACACTCTTAGTTTTCCTCTGCGGTCGT
GACTCCATGAAGATAGCCTCGGCCCACAGTCGGCCGGCGGTGGGACATTCTTGTAGCGCT
TTGGCCATCACCGCGTTGGCTATCTCAGCGCTGGCGTTACGTCTCTCCAATCTTACACTC
TCTAGCCATAACTCTGCATTTTTAGGATTCCTAAGTCTGGCCTTTTCCAAAACAGACCTA
GCTTTGGTCACATGCTTCAATTTCTCCTCCAACCTCGAAAGCAATATCCACATAGGTACA
CTCGTTGGGCATTTTTTTAACCCTTGAGTATAAGTATTATGGGCGTCATCGTCTTTGCCC
ATTTGTTCTTCAATTTGCCCTTTCATCATGTGTAATTTGGCATAATCGCCAAAAACTTTG
ATCGCCTCTTCCAGTAATTTTATAGCGACATCCAAATTGTTGAGTGCCCATTCTAGTTTC
GCTGATTTTATCATCACCCTTGGTGTAGGTGCAGAAGCCCTAGCTTTGGAAAGCAGCCGT
CTCGCTCTATCGTATTCTTTGTTCTCGCTCTCAAGTTTGACAGCAGCCAACCAAATCTCT
TCAGAATTAGGATTGGCTTGGAAGGCCAATGATAGAATACCACGAGCGGCTGGCACGTCC
CCCGCGAGCCACTTAGACTTGGCTCCCATAAGCCACAGCACCTCAGACTTGGGGCAGTGA
GCCACGGCGCGCTGCAACAGCGTCTCGAGACTGGCGCGAGTGCCGTGCTGCTTCTCGAGG
TAGGCCGCGCGGAGCCAGATGGACTTCTTGGACGGAAACACGGACAGAGCGTAGCCGTAT
ACTGCGCGAGCACATTCGAATGCACCTTCGTTTGCGCACGCTTCCGCGTCTTCCATCCAC
GTATGTTTCTGATCTTCTGGTTCGATGCCGTGACCGATCACAGAACGAATTATAGCCTGA
CATGTTGAAACGGCTCCAGATTTCTCAGCCTCCATGGCCTCCTTGAACCAGTGTTCACGG
TTGATTTCAACGCCGTTCGCACTTAGAGATGTAATCGCACGATCAATGATTTTTTCCACC
ATGTGTGTGTTACCATGTGCTTCTTCAAGCTTAGCCGCTGTCACCCAAATCTGTCGATCA
GTAGGTATATTCTCACGCGCTTTGTTAAGCACTTTCCTTGCGTTTTCATAAGTCTCAAGT
CTCGCTAAGGCCAGCCATAATTCAACACTGGTAGGACAACATTCTACAGCCCGAGATAGT
AATATACGGGCGTCTTCTGGATTCTCGAGTTCGACGGCGGCTTTCCAAAGTCGAACTGAA
TTTGGAATGTGTTCTAGGGCTTTGCGGAACACTCTACGTTTAGCCTTAGGCTCCTGTTCC
AAATCCGCAGCTTTGACCCATATCCTAACACTATGGGGTAAGTTCCGAGCAGCGTGCGCG
ATGACCGCCCGCGCCGTGTCCCGCGGCTGAAGGCGAGCGGCTTCTAACCAGAGCTCTTCA
CTACTCGGATTTACCTCACACCCCTTCATTATTAGATTACGGGCTGTTTGCACTTTACCA
GTAACTTCTTCCAATCGAGCACTAGCAATCCAAGCAGGTGGATGATTTGGATTAGTTTCA
CGCACAGATTTCAGCAACAATCTAGCTTTCTTGATATCATTTATATCACCACCATAAGTA
GGTATCATTGATTGTAAATCTGTTAGATACCCTTTGGGATCGACTACCGTTTGACCTGGA
CAGTTTTACCGTCATCAGAGTGTTTCTAGCTTGACCAATCTTTCTTAAGTCAAGGTCACC
TGATGGAGTTAACATTCCAGGAGTCACTACACCAGGCATCATAGAAGCCAGTCCTGAGCC
TGGGTCTATAGAGCTAGATGATTCCCCACCCAGGTTCCTTGATAACACACTATCGGGTAA
TGGTGTGAACTTTTCAGCTCGAGGGTTACGCTGTTTTCTATTACGAGCATCGCCCACTTC
GGGGATCGCTGCCCATTCATCTTCAGACACAGTTTTAAGTTCCCGTTTTAGATCAGAAAA
TTGTTGTTGGATTTTGGGTCTTTCCTGACGATATCTTTCTAAGTCTTCCTTAAGTCTCTT
TTCTCTGTATTCTTTCCTCTTTTCATCCATTCTCTTGTCAATAGATTCATAAATAGCATC
AGCTTCTGCATCATCTTTGTCATAAGGATCCTTAGAGAACAAAGATCCACTGTATCCAGA
GAACTCATCATAATTAGAGTCATTTAAATCTTCATCATCATCTTCTTCCTCTGTTTTTTT
ACGTTTAGCCGCTGGAGGTGCATGACGATCGTCGGACACATCGTTAGCGTCTCGTGCAGG
ACCGATATCAGATCGTGTTGTAAAACCGGTAGCTCCTCTTCCTACTCCTGCTACATAACC
TAGCGGTGCAGGAATACCCAAAAAATGTTTCTTGTTTTTGTTGACAAATGCTTGTGGTGG
TACAGACATTTTTTAAATAACGACAGAACTTTTGCTATTCCGTGAATTGTAGTTTAAATA
ACGTTTATAGTTATTAGTTATCAAATTAATAAAAATACAGCAGTGCACAAAACAAACTCA
ATT
(3183 bp)

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