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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaMG_comp26465_c0_seq4
Scaffold_id
NCBI non-redundant
(nr)		E3_ubiquitin-protein_ligase_BRE1B_[Papilio_xuthus]
Ontology
GO:0000790 C chromatin
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0006513 P protein monoubiquitination
GO:0006909 P phagocytosis
GO:0007219 P Notch signaling pathway
GO:0007422 P peripheral nervous system development
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016568 P chromatin organization
GO:0016570 P histone modification
GO:0016574 P histone ubiquitination
GO:0016874 F ligase activity
GO:0046872 F metal ion binding
Transcript
Level		FPKM:0.46 TPM:0.39
ORF EntryO_TrvaMG12774_5prime_partial:A_TrvaMG_comp26465_c0_seq4
Sequence
(Nucleotide)
TTAAAGTCTCGTTAACTATTTTCTATTAATTATTTACACTATACATAATAGTATAAACGT
GTAATTTGTTTCGAAAGTAGACGTAAACCATAATAGATAATAAGAAAAAAAGCATGTCGT
TATAAAATTTACCTACTTAAAAATAATTATTACAGCTGTAGGCGACACACGCGAGCCGTA
TAATGCCCTACAATTAATAATATTACAATAATATACTTAAACTTAACAAGAACACGAGTA
CACACGTCGTGCTTATAAATAATAAACTAAATACTGTCAAATAAATTGTTCCCTTGATTT
TTAGTTTATCTTAAATAATCATCTCCAGGTGAAAATATACAATAATTAATGGGCATCTAT
GTTTATAGGAAATAGTTTGTTTTCACAACAAAAACTATAATTATTTAAAAATTTTCAGAC
TAAAATATGTAGATGATTTCTTCGTGTTTTAATGTTGATGTGAATGCTTGTCCTCACAAA
CTTGGGACATCATTAGGTATGTGTGGACTATGGGTTATAGTTAATGCTTGTTATCTAAAT
TTAATAATGCTAAAATCAGAAAGTGTTTTAAACGTTAGCTTAAATTAGAAATAATAACTA
TTTCAGTGAAATATAAATAAAATTATTCACTTACAGGTATTCTCAGATTATTTCCACAGA
ACTTGTTTACATTCTAAAATCCACTTTCTGTTCCTAATAATTCAATAAGTGAAAATGCTT
CATTGACACTAAGTGCGAGATCGAAGTAAGAATTATAACGTTAAACCCACTACTCATTAC
AGTCATAAACACTGTTTACATTCACACAAAGCGCAGACGAATCAACAGGAATATAAAACT
ATTGGAATATAAGATCTAAAATACATAAATATTTATTAAATTCATTGTTTTCTCGGCAAG
TTAGTTCATTCACGTTTCAGTCACTACGCCGATGGGATTCATTCAATATAATGAATCATA
AAACAAGCTATTAACAGTTCAAATTCAAGGCATACACAATTAAAATATCAATGAATAAGT
ACTGAATCGATAATCATTTGTCAAGTTATTCGCCTTAATATTTACAAAATAAAAACCGAC
TTATCGTCTCGCGGGTTTCAACTTTCAGTCATTATGCGATATTGTTCGATTTCTCTAATC
ATAATACTATAATTAAACGTGATAAGAAGACTTATCTGACTCAACAAGTGCACTATAAGT
CGTTTCAACTAGTCTCAGCATTCCATTTCAAAGCCCATGCTCAGCAAACTTTCGATGGAT
CAACTATAATGGGAATCACAACCCGAATGGCGCATTCAGTCATGTAGTTGAACATGTCGA
GAACTGGGCGATTTACCTTACAGTCCGAACCCAAGTATCATCGACCGTATGTAAGGTCCA
TGAACAGTCGTAATACAACTAGATGATTTTCGCGTCGTTTGATTATGCACTACCTTTTTG
AAGGCTGGATCCGCGGTGGTTCGGTGGGCAGGAAGCGTAGACAGAGTACCGCCAGGGTAG
AGTAGGGTAGAGTGCGCGTGTGATGTCGTCTCTACGTGGAGAGGTAGAGGCGATGGTAGT
CGTTGGCTCCGAAGGCGGCGTTGCACTTGGGACACTTGCGTTGTCGCGTCTCGTAGCGCG
TGCGGAGACAATCCCAGCAGAACACGTGGAAACACTTCGTTAGCACCGCGTCTTTGCGTT
TCACCTTGCAGGAGGGGCAGGTGAGAGTCTCCTTGTACTCGCGTATCTCCTCGAGCAGCA
CCTCGTCCATACTGCTGCCGGCTTGCTCCATTTTCTTCATCCTCTCCGCTTTACGTCGCA
ATATTGCAAGCTCCTCATGGAGTCTTTTTGTTTTATAAGCTTCTGCTTCGAGTGCGCTCG
TCTTCTCGGCTACGACTTGTTGCGCCTCCTTCATTTGTGCGTGATATTTCTCTAAATGCA
GCTTGAGGTCAGCAGCGGACTGCGCGGACTCGATGGCCTTGCGCTTGTGCATCTCCATGG
CCTGTTGTCGCAGCAGCAGCTCCTTCTCGACGGCAGAGAGCGTGGCCTGCAGCAGCCGCT
CCTTCTCCTCGAGACGCCGCGCCACCGCGCCCATGGACTCGATCTGCTGATCACGAGTTA
TCACCTGTTCCTGTAATAATTGTTTTTCTTCTCTCAATAACTTATGTAACGAATTAGCCT
TTATTCTCTCTGACATTAGTTTGAAATTAGCATCGTCCTTCTCCCGCAGCTGCTGAATGA
GCCGCGAGTTTTGTTCCTGCATGTCCTCGAACGCTTGACCCGTCACTTCCATCTCATTTA
ACAGAGCTTCTTCTTCCGGTGATCCGGCGAAGGGCCTGGAGAAGGGATGCATGGTGTCTG
CGTTGGGTCGAGCACAGGACAGCTGTTTCTGCAGCTCGTATTTCTGTTCCTCCAGCTGCT
TGATCTTACGAAGCGCGTCCTCGTCAGCCATGCGACGCTCGCGTTTACTCTCCTGCGCCA
TCTTGGCCTTCTGTCGATGGTCCTCTAGTTCCTGGCGCGCCTTCCTCTCGGCGGCCATCA
GCTGCACCTTGTCGCGCTGCTCCTTGCTCACTCCCTTGTACATGTCCAATAGTAACTTCA
ACTCTTTCTGTTCGTTCACCGCTTTCTTGAGTTGTTGCTTGAGTTCCTTAATAATTTGTT
CTTGTTCCTGGCGCGCCTTCCTCTCGGCGGCCATCAGCTGCACCTTGTCGCGCTGCTCCT
TGCTCACTCCCTTGTACATGTCCAATAGTAACTTCAACTCTTTCTGTTCGTTCACCGCTT
TCTTGAGTTGTTGCTTGAGTTCCTTAATAATTTGTTCTT
(2799 bp)

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