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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaMG_comp26451_c0_seq2
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_DNA_repair_protein_RAD50_[Bombyx_mori]
Ontology
GO:0000014 F single-stranded DNA endodeoxyribonuclease activity
GO:0000019 P regulation of mitotic recombination
GO:0000166 F nucleotide binding
GO:0000722 P telomere maintenance via recombination
GO:0000723 P telomere maintenance
GO:0000724 P double-strand break repair via homologous recombination
GO:0000781 C chromosome, telomeric region
GO:0000784 C chromosome, telomeric region
GO:0000790 C chromatin
GO:0000794 C condensed nuclear chromosome
GO:0003677 F DNA binding
GO:0003691 F double-stranded telomeric DNA binding
GO:0004003 F DNA helicase activity
GO:0004017 F adenylate kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006302 P double-strand break repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007004 P telomere maintenance via telomerase
GO:0007049 P cell cycle
GO:0007131 P reciprocal meiotic recombination
GO:0007346 P regulation of mitotic cell cycle
GO:0008408 F 3'-5' exonuclease activity
GO:0016020 C membrane
GO:0016233 P telomere capping
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0030674 F protein-macromolecule adaptor activity
GO:0030870 C Mre11 complex
GO:0031860 P telomeric 3' overhang formation
GO:0031954 P positive regulation of protein autophosphorylation
GO:0032206 P positive regulation of telomere maintenance
GO:0032508 P DNA duplex unwinding
GO:0033674 P positive regulation of kinase activity
GO:0035861 C site of double-strand break
GO:0043047 F single-stranded telomeric DNA binding
GO:0045120 C pronucleus
GO:0046872 F metal ion binding
GO:0046939 P nucleotide phosphorylation
GO:0051276 P chromosome organization
GO:0051321 P meiotic cell cycle
GO:0051880 F G-quadruplex DNA binding
GO:0070192 P chromosome organization involved in meiotic cell cycle
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:1904354 P negative regulation of telomere capping
Transcript
Level		FPKM:3.09 TPM:2.60
ORF EntryO_TrvaMG12743_internal:A_TrvaMG_comp26451_c0_seq2
Sequence
(Nucleotide)
ATAGCTTTGGTTACATGTAGCTCATACATTTTTTCTCTAAACTTTTTTTCTATATCTTTA
GACAAACATTTATCCAACTCATTCTTGAAGCTTTTTAAATTTTTCTTAAGTTCACTTAAA
GCGCCAGTGCATTCTGCCTTTTGTTGGAATAACTTAGTTTGTTGAATTATGAGAGATTCT
TTTTCGTTTAACTCTTCCCTGTTTATGCCATTCAATTTTTCATTTAATTCTTCATCTTGT
TTTAACCAATTAGTAATATCAGTTTGTGCTTTACGCAAGCTTAAATTGTCATCCAGATCC
CTTTTGTAAATCTCCTGTTTTGCAATTTCATCCCTAAGAGTATCAATTTTTTTTGTAAGC
ACTTGTCTGTCGGTCATGATTTGTTTTTGCTTCTCCAATAATTTTTCGTTTGCCTCTTGT
ATTTTCTCCATTTCTCGAGGAATATTCTTATCCTTATGCTGCTGTATTTCAGTCACAAGT
GCCTTCACTTTATCATATGCTGACAAGACTTTTGCAATGTAAGTTTCTCGAGTTTCTATT
AATTCTCTGTTCTTCGCGACTACTTCAGCTTTAGCATCGATTTTTTCTTTAAGTGCATCT
TCCAGAGGTGTGATAGATTCTTTGAGTTCCGTTAACTCAGTTTCTAATTTTTGACAATCT
TCAAGGAGTTGCTTCTTATTTTCCTCAAGGTTCACAATATCCTGAACCTTTTTCTGTATA
TTCATCACTTCTTCCTTGGCTTTATTTTTCTTATCCGATAATGTTTGTAGTTTCTTGTTG
TGTAGGTTTAGTTTCTTCTGTGTGGTTTTGACGCGGGTCCGAAGAGTACTGATTTTCTGC
TTAAGATCAACTTGTTTCGCTGTTGCTACATCCAATGTCATGTCTGAGTCGACATCACCA
CATTGTTCTTTTATTGCTTCAAATTTTTTAGTAACAGTTTTGATCTCCTGTAAGTAGCGA
TCAAGCATTGGCATATCTCCATGTATTTGTTTAGCTGTAGTCATCTTTTGTTCTGGTTCG
ATCAATGACATTGTCACTTCTTCAACTGTTTCATTCAATGCTTTAATTTGAGTATCCACA
TCAACAATCCGTTTCTCTAATTGAGGAATTTCAGTTTCTTTAAGGCTAACAATTTTTTCA
TTCAAAGTCTTCATACTTAGCAGTTCATCCTTTTTTGCAGATGCTCTTTGAAGCTCTTCA
GTTGTTTTCTCAAGTTTGCTTGGCACATTCATTACTTGTGTTGTTAGTTGAGTTATTAAG
TCTGTTACGTCACTTTCATTGTCAAAGCCACGGTTGCATAATGGACAACAACTATTATCT
TTTAGTTGTCCTTTATACTTGTTGATTATGAACATTGAAGATTGAAGAACATTTTGTTCA
TCCTGTAGTTTTTCTACTGTAGTAGTATACTTTGACAAGGCAGATTCGTAAGGTTGAGTT
CCACATGCTTTGTATATTTTATCTTCAGCATTTGTCAGTTCAGTGCGTCGTTCATTCAAG
GAATCGCGTACATGCTTTCGCTCGGCTTCTAAAGTAGTTACCTCAATTTGTTTTTCTTTT
AATTTCTTCTTCAAAGTTTCAACTTGGTTTCGTACTTCACATTCAAACTTATTGATAGTC
ACAGCAAAATCTTTTTCAGGTACATTACCAAGCAGTTCCATCAAGGCAGTCTTGTGTTTG
TTCTTAAGAACTAATAACTGTTTCTCTTTATTTTTGAGATTCTCTTCAATGATTTCTTTC
TCTTTCAGTTTAGCAGTTTGTTTTTGTAATTTCGTTATCTTTTGACTAAGTTCTTCCATT
TCTTGTTCATGTTGCTCCACAGCTTTTTCATCATCATTGATCTCTTGCTGACATTCTTCA
ATATTTAATTCGTTTTCAGCTTGTTTGTGCTCTTCTTCAACTGCAGCTAATTTCTTTTCA
ACCAGTTCAAGTTTATCTTTTGATTGATTAGCAGATGTTATGTCCTTCTCTGTTTTAGTG
ATTTCCTTTTTCTTTTTATTTATCTCAGATTCTTTACTACTGATTTTTTGTTTATGTCCA
GACAAAGCTTCTCGACATTCATCAACAAAAACTTGCATTTTCTTTTCTTCCTCATCAGTT
TGTCCTTTTTGAGCTTTCAGATCATCTTTAAGACTTTGTACTTTCTCAGATACAGTTTGT
ATTGCTTTCTCTGCTTCCTCATTTGTTTGTACTTCATTGATGTCTTCAATTTCTGCAATT
TTTGCAGCCTCTACAATCTGTTCATTTCTCTTGTCAATCTTCTCCTGATTTTGACTTTCT
AACAATATAAACTTGTTGTACTTTATCTCATTGGAAGATTTTTCA
(2325 bp)

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