SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaMG_comp26434_c0_seq1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_negative_elongation_factor_D_[Amyelois_transitella]
Ontology
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005703 C polytene chromosome puff
GO:0005705 C polytene chromosome interband
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007070 P obsolete negative regulation of transcription from RNA polymerase II promoter during mitotic cell cycle
GO:0008023 C transcription elongation factor complex
GO:0017053 C transcription repressor complex
GO:0022008 P neurogenesis
GO:0032021 C NELF complex
GO:0034244 P negative regulation of transcription elongation from RNA polymerase II promoter
GO:0045892 P negative regulation of transcription, DNA-templated
Transcript
Level		FPKM:0.90 TPM:0.76
ORF EntryO_TrvaMG12661_5prime_partial:A_TrvaMG_comp26434_c0_seq1
Sequence
(Nucleotide)
AGTTAAAGTTAGTGAAGTTCAAGCAATGGTCGAAAATCATTTAAAAGATATGATACTCAA
AACATTTGATCCTAAAAAAGCTGATACAATATTCACAGAAGAGGGAGAGACACCTGCTTG
GCTGACAGAAATGATTGAACATCCCACTTGGAGATCTTTAATTTATAGACTGGCTGAAGA
ATATCCTGATTGTTTGATGTTAAACTTTACCATAAAGCTTATATCTGATGCTGGTTTTCA
AGGAGAAATTACTAGCATATCAACAGCTGCACAACAAATAGAGGTATTTTCCAGAGTTCT
GAAATCAGCCATAGTTGGATTTCTTCAAAGTTCAGACGACTGGCAAAATAGTGTCAATGA
ATGTGCAAAAATGGTGTGCCATGGTGCTCACACTTATGTATATAGCCAAGTAATTGTTCA
CATTTTGTCACAAGAACCAAGAGGTGGTGCTATTATGAAGAGGTTGAGTCAGGAAATAAC
ACGTTGTGCTCAACAAGGTGGTCATGATGTCACTCCGATAACACTAGCTCTAACAGCGGG
GGAAAGTTGGCGCAATGCTCGAACTGCCCTGGCCGCCATGTTGTCCCGAGGCGCTCTCAA
CCCGGCCGACATATCAGTATTGTTCCGAGCTTACACTCAGACAGATCCTCCACCAGTTCA
TTTGCTTAGAATACCACAGTTTTTAGAATTACTTGTTGATTCACTTTTCAAATCTGGCAG
CAAATTAAATCCAGAACACAAGTCCAAATATATGTATCTTCTGGCATATTCTGCCAGTGT
TTGTGAGAGTCCCAGTCCGGGCAAGCCGGTCAAAGACGAACTAAAGGCGACAGTGCAAGC
TATTGAAAAAGTACACGCTGTATGCAGCAGCTCTGCAAGCTCTAGCGAACTAATAGCTGA
ACTTCCAACTCTATACCATTGCATAAGATTTCCCGTTGTCGGTATGGGAGTTTTAGTTTG
GGTTGAATGTGTTGTGACTGAACCTTCGTACTTCAAACTCTGCACTGAACATTGTCCTCT
GCATCTTGCATTGTTAGATGAAGTAGCATCTTGTCATCCTTTGCTACATCACAGACTTCT
GAGATTATTGGTAAAACTCTTTGAATCTCCGCAAGACGAATTGGAAATATTAGTTCAGCT
GGAATTGAAAAAAATGTTATTAGATAGAATGGTAAATCTATTAAGTCGCGGTTGTGTTGT
TCCTGTTCTCCGATATATTAAACAATGTTGGCAACGTGGTGATACAGATATATCACTAAT
AAGATATTTTATAACTGAGGTTTTGGATGCAATAGCACCCCCTTATACACCAGAGTTTGT
GCAATTAGTGCTACCTATGGTAGAAAATGAAGAAATAACTGGAACAATGAGAGCAGAAGG
GGAAAACGATCCTGTATCTGAATTTATTGTTCACTGCAAAGCACATTTCGTCGTTGTTTG
AAGATTACATACATTTAATTAATTACATTATTATAATTAACAATTAAAATCTTATTATTC
CTGTTTTATTGTAAATACTCTTAGTTCATCGTTACAGTATCTAACATCCTCTTGCAGCTT
TTCTTTCATAATATCGTCTAAGTGCTTCTTCAAACACAACCCCAACAGTTCGCTTTTTCC
AAATGTCAATTTTTTCTTTTATCTCAACCTCACTATTCTCAATAGTCAGAGTTGTATTTT
GTGATTCTGATTTTATTACATTCATCTTATTCTGTTCATTTTCATCACTCTTTGGAGGAT
CTCCCTTTGTTGTTTTTAAATTTGGTTGTTTATCTTCTCCATCACTAGAATCATCAATTG
AAAAATCAGAATCAGCATCTATATTCTCATTATCTTTTTTCAATCTTTTTATTTTTCTTA
TATGTTCAAGATTCAGACGATTCACTTCTTCATCAGAATCCTCAATTTCACCATCAGACA
ACAAGTCATTATTGTCCGTAAGTTCCCTTTTACGATAATTTCTTTTCTTTACAGTTTCCA
CAGGATCCTTATTTTTATGACAATGGTTTTTCTCATTTTTTTCACTCCCTCTGTTATCAC
CTTTTCCTAATTTTTGCTCATACAAATGACGATAAAACCCACCTGAAACCAGAAGTTATG
TAGTGAACTAAATTAGACAGATTCATATGTATAGCAATGTTGTGTTGTTTTGTATGGGAA
TTCTTACTCGCCAGCAAGCTAGTAATTCATACAATAAGTAAAATATTTTCTAAGATAATA
GTTTTCAATGACTATTATAATATTGTATCTTTT
(2253 bp)

- SilkBase 1999-2023 -