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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaMG_comp26416_c1_seq2
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_exosome_component_10_[Amyelois_transitella]
Ontology
GO:0000166 F nucleotide binding
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0000176 C nuclear exosome (RNase complex)
GO:0000178 C exosome (RNase complex)
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000460 P maturation of 5.8S rRNA
GO:0000956 P nuclear-transcribed mRNA catabolic process
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004532 F exoribonuclease activity
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006139 P nucleobase-containing compound metabolic process
GO:0006364 P rRNA processing
GO:0006396 P RNA processing
GO:0008408 F 3'-5' exonuclease activity
GO:0009048 P dosage compensation by inactivation of X chromosome
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0035327 C euchromatin
GO:0044237 P cellular metabolic process
GO:0044822 F RNA binding
GO:0071028 P nuclear mRNA surveillance
GO:0071034 P CUT catabolic process
GO:0071035 P nuclear polyadenylation-dependent rRNA catabolic process
GO:0071044 P histone mRNA catabolic process
GO:0071048 P nuclear mRNA surveillance
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
Transcript
Level		FPKM:8.10 TPM:6.82
ORF EntryO_TrvaMG12591_3prime_partial:A_TrvaMG_comp26416_c1_seq2
Sequence
(Nucleotide)
GATCACATTCTGTTTGACAAAGGGAGGCATCGGATCACAACAGGCGTTCACTCCTTGAAG
CTCACGGGGCAATGATTCCGAGAGGGACAGTAGCATATGGTTTGGAAGAAGGTACGTAGT
GCTTTCATCCAAAAGTCGTGCCTGTGCATCGCGCCATCTGTAAAGCATCTTTAGAGCCGC
CATTTGTTGGTTGTCGAAATTCTTCTTCGAACGAATGTAGAGTGGTATGTGACTCTCTTC
GTGAATAACCTCCTTGTTGTATGTCGAGGAGCAAGTGTGTCGGCTATGTTCGAAGACCGA
CATGAGCATGTGGGTCTCGCCGGCGTTCTTCTCGATGAGCTCTCCCTTCATGATACGCCA
CACGTATAGCAGGTAGTGAGTATCCATGCGAGCGTACTTGATCAGCACGTCCGGGAGTGG
ACGAATGCGCCAGTCCGCAAGACGATACGTTTTATCTGTGTCGACGTTGCAGTACTTCAT
GAGAAGGTATTTGAGCGAGAGTCCGGGAAGGCCCAACAGTTTCGCGGCGTGGTATGTGTC
GAATAGACCCACTATGTACACGCCGAAGTCTCTTTGGAGCCAGAGTACATCACTGTCAGC
ACCGTGAAACACCTTTAGTTTCTTGGGATCAGTGAAGATAACGTTCAGTTTATGTATGTG
TTCCCTTACAGCTAAAGCATCGATGATAAAATCACCACCTTCATCAGTTGATATTTGAAT
GAGACAGGTTATACCTTGGTATGTCCTGTAGGAATGATGTTCCACGTCTACGGCTATCTG
TTCAACAGTCATTAGATGTCCGACCAGATCGTCTAGTTTGGATTCTATATCGATGTACGT
GAATTTAGTCTCCTCGAGCGGAGCAGGGTATACCGGGGCTTTCGGGTCGGGATCGATGAA
CTGCGACGGAGGGTGGTACATGTCCAACTCAACGCGGTATGGATGCTCATATCCAACTGC
TTCACCCTTTTCATTGTACAAAATGTTTAAGGCCAAAGGCTTGATATTGTTTGGCTTATC
TGAAATTTTGGGCACCCACAGGTTTTCAGAGTTGTCGATGATATCCTTAAAAGTAAGTTG
AGGACGCGGAATGTTTTTCGCTCCGATTAATATGGTCGATCCTATCTGTTTCTCTGAAAT
GACAGGCTTATTCCAGGGCGAAGAATTATTAGACGTGTCCTTTAAACCGCTCGCGAAAGC
TTCGTTGGGTAGGTTGGCACCACTCACTGTGTCGATATTTATATTCACTCTATCCAGAAG
GCTGTCGTTTACATCAGCGATCTTCTCTAAGTTGGATGTTAAATCCTCACACTTTAGTTT
TATAGATGGCTGTTCAGTGTGAATAATTTCGTTCGACTGTTGTATTAAATTTTCGCTTAT
CTGATTCGAAATTTCATTGAACTCTGGATATGTTTTGAATAAATCATATGAGGAGCTCAT
AGGCAGTTGATTTGATGATTTTATGGTCTTGTTCACAGTCGCGTATCCTTCCTTAGTCAC
TGCCGCCAAAGGAGGATAGAACTCTGGTGCATCAGGATTTAACGCGGAATTCATCTTGAT
GCGTAAATAAAAATGACAGTCGAAACTGAAATAGAACAGCAGCCTTTGGATCGCGAGCTT
GTGATATTACTTTGTAGTTTGTACTAGATCAGATAACTCGACTGCCCG
(1668 bp)

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