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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaMG_comp26337_c1_seq3
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_splicing_factor_3B_subunit_1_[Papilio_machaon]
Ontology
GO:0000245 P spliceosomal complex assembly
GO:0000375 P RNA splicing, via transesterification reactions
GO:0000398 P mRNA splicing, via spliceosome
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005686 C U2 snRNP
GO:0005689 C U12-type spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0034693 C U11/U12 snRNP
GO:0044822 F RNA binding
GO:0045815 P epigenetic maintenance of chromatin in transcription-competent conformation
GO:0071004 C U2-type prespliceosome
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:9.25 TPM:7.79
ORF EntryO_TrvaMG12221_5prime_partial:A_TrvaMG_comp26337_c1_seq3
Sequence
(Nucleotide)
TTTTTTTTTTTTTTTTTTGGAATTAACTTCATTTATTTTCTATGTAAGCCCAGAAAACTT
TCTAGTCTATAATTATAATCTTAATACATATTTAGAGCATATAATCCAACTCGTATCGAA
TAAAATGATTATTTGGATCGTTTTGTATTCTGGGGTATCCTGCGACGAGTGCGTCTTGTC
CTCCGATGTAAAGCGTGTTGTATATTTTCCAGTACACGTCTCGTACTTTTCTTGCGGGAT
GGAATAAGCCCTGTAGTGCATATTGCAGTATTTTAATAGGTCCAAGTGCCACTCGCATTC
CCTCAACAGCATCCATGAAAGCTTGAACTAAATGTGGCGAAGTTTCAAATATATTTGGCC
AAACATGATTTAGTAAATGTACCAAGGCATCTTCACAGCCAAAACCGTAAACGCCGAGAG
ACATGTGTTTTATGGCAGCGCAGGCTGTTTGTCTGTGTACTAGATCTCTATCCATTAGCG
CATCTTCCAACAGTGGGCAGACTGCATAAATATAATCTTTTCCCATTTCGCCAATGTATT
CAAACAGGAAAGAGAGCGATTTTAGTACACCATTTTGAACATTTAGTTCAGGAACTCTGT
ACTCATTCATTAAGGCGGGTAATACTGTGAATGGTGAACAAGTTTCCGCAACTATAGCGA
TAGCAACAGTTGTGCATACTCTGTTTTGTCTCTCTTGCACTTTCAAATTATTAAGTAAAG
TTGCAAGCACATCATGGGGACCGATAGCTTTCGCAATATAACCGAAAGTGTTGACAGTCG
CTCGACGAATCGCCTTTTTGTGGGCCTTCAACAGTTCCAGTAGTTCAAAACATATTCTCA
TCCATTCTCTCGCCGACACAAACTCTGGTCCTCTGTCGGCGATGCGACCCACCAAATCAA
TACAGTTCTCTTGCACTTTTTCGTGTCTGTTTTTCAAAATAGGTGTCAGTCTAGGTAGAA
GATCCTTGATGGGCGGAGTCATTTTCGTCATACCAATAACATTGACTATAGCTTTCAGAG
CACCAAGTATAGAACCTAGCACTTCGGGATATTCTTCTCCTAAGTACTCATATAGCACAA
CACCCAGATGACCCATTAATTTTTCCTCTTGACAAGTTTTCATGACTACAGCGATCCTGG
AAATAAGATCGGCGGCTTGTTGACGAACTTTAGCAGACTTGTTGTTCATACGCCACAGAA
TAATACCGCATATCTGCGGTAAATACGGCTTCACGCGTTTGCCCAGTTGATTCACGATTG
TTCCGAAACCGTTCAGCATTACAACATCCTCCGTTGTCTGTTCTTGAAACGCGTACAATA
TTCCGTCAATAAGCGCTTCTTCTAGTTTAGAATCAATGTCTGCTGCACCTAAATTAGCGA
GAATCTTTTCAATAGACTCCATCACCATTTTTCTGTACTGCTCATTATCATCTTTCAAAT
CATCTACGATTCTGTTGATGATTTCTGATGCTCCAACCTTATTAGCTATTTCTACAGTGG
TGTCGACGAGTTGGCGGTAGTTCCTGCGATCGAGGGCCATACGATGATTCCAAAAGTGCT
TGAAGAAGTGTGGTAATATTTCATCCATTATGTACTGAGGCTCCACACCATCCGTGCCAC
AACATTGCTTGACTACCTTTAAGACAATTTTCTTCATTTCTTCATCTGGCGACTGGAACT
CACGAATAAGGATCAACATCACTTCTCGTGTATAATAATTAGCGTATTCTGCGTCCATGA
GCGGAATCAGGTATCCGATAGCTTTGAGGAAGGCAGCCAGCCCTTTACCTCGATGTGTAC
GAATACCCTTCCACAGCGGTTTGAGCACCGAGTCGAAGGACTCGATACCGTAGGGCGTAG
CGGCCTCGGCGAGGGCGGCACTCGCTAGAGCGGTAATTGTTCGCACTTTTTGTTGCTCGT
CCACCAGTCCATGCTCAATGATTTCAACAAGTGACTTCAGATGTGGTAATATGGCACAAC
CCATCAAAATAGCAATCTGTTGTACAATTTTTATTCCTGTGTGACGAGCTTGCCAAGACT
TCTTGGACCTACATACAGCTTTCAAAAAGGGCAATAAGGAAGGTATACCCAAAGCCGAAG
CTACAACGGCAAAAGCTCTGGCAGTTGTATTTCTCACATATTCATCTATATTATCAATGT
CAGGTCTCATTGTTGAGATCATGGTAGCCAGCCCGGCCGCCTTCGCCAAGTTAGAGATGA
TCTCACGACCCTCCACGCGAGCGTAGTAGTCTTCGTCGATGAGCAACGGTTCAATAACGA
CAAGGATCTTATGAACGTAGGGTCGAACCAAGTCGTCCAATTTGTACAAAATACGGTCTA
TAACTTTGACCAGTAAATGTCGCTCTTGGTCTTCCAGTGTGGGGCTCATCAGCAATGGCA
ATATTTGATTAAATAGTGGTCCGGCACCAAACTCTCTGGCCTTGTCAGTTATTTGACGTA
AAGCAGCTTTGCACATGGGCGGTGTACCGTTCTTAATTTTCAAGAGCAGCTTCATAATCT
TCCGTTCCTTAAGTTCATCCGGCGAGAGCGTGTCCTCGTCGACGTCGATGAGCAGTTTGT
CGAAGTACTGCGCGTCCTCGGGCTTCATGAAGGGCAGCTGCTGGTTCCCCTTGGGCTGCG
GGTCGAGCAGACGCGCCGCGGCCGCGCCCGAGCCGCCCGCCTCCTCCGTCTGCATGAAAA
ACCCGATTGGAGTACCGCCCAGGGGCGTGGGCGTCGCCGTCAGCTTGCGGGCCGGCGTCC
GAATCGGGACGTACCCGGCAGGCGGTGGTAAAACCTTGTACCCAGGAGGGAACATGGCAT
CAAGTTCTTCATCTGTATATGGTCTGTTACGTTCATCTATTTCCTTCTCCCATCGGTAGG
CTTGCAACTGCTCTGGGGTCATGGCTGCCACATGACCAGGGGTTGGAGTAGCTAGAGCCA
TGGCTTTCACTCCCACTGGAGTAGACCCTCCGGGTGTGAAGACAGGCGTATGTGGCGTCG
GCGTGGCGAGCGACGGCGTGGCGTGCGAGGGCGTGGCGTGTGACGGCGTGGCGTGCGAGG
GAGTGGGCGTGGCCGGAGCGGGCGTAGCGCCGGGAGTCTCGTCCCATCGTGATCGCCGTT
TGGTGCCGGGAGTCGGAGTCTCCTGTATTGTGTCGACACCGGTACCGCGATCTGTACGCG
GGGTCTCAGCCCATCCGCTGTTGTGTCCCGGTGTTTCTCTATCTGTCTTAGGTGTTTCAT
CCCATCGATTCCTCCTGGAAGCATGATGGGCAGGTGTCTCCCGCCCTGGTGTAGCATGTC
CAGGTGTGATGTGTCCGGGTGTGGCGTCCCAGACGCGTGCGGAGGGTGTGGCGCCGGGTG
TCTCACCGCCGCGTCCCCCTCCTCCAGGAGTCTCTTCCCATGTTCCTCTCTCAGCATCCC
ATGATGGTGTAGTTTGTGATGTAGGTGTAGCTGATACAGTTTTCTTCACAACTGGTGTTT
CATCAGAACTTTGATCCCATCTGCCTTTGCGTTTAGCAACTGGTTTCACAGATTCTCCAT
TTGACTGCACCACTGGCTTCAGAGTTCCTTCCCTTGCTTTTTCCAAAAGCTTTTTTCTAA
GCTCTGTTTCTTCAGCAAGAAGGTATTGTTCCTTCATAATATCAGTGTAGGTTCTTGAGC
CAACATCAGGAGTTTTACCACCCTCTGCAAATGGATCATTTCTTTCAGGAGAGATAATCA
TCCTGCGCCTTTTCTGTCTATATTCATCTTCTCTGTCTGCAATTGTTGGTCTTCTTTTGT
CAGCAAATGGGTCAAACTCTTTATCACTCTGTGCAATGTCATTTAATATTGAAGCTGGTG
CAGTATAGCCCGGCCTTTTCTGTGAAACGGGGACATTCTCCACATCATCATCTTCGACTT
CATCATTAGCAGCAATTGATGTGACATATCCATCATATCGGGACTTGCCCCCTGCTCCCG
AACTATCATATATGTCACTATCATAATATGTCTCTCCGAGGGACACACCTTTGTTTGAAC
CATTTTCAGGTAGCTCACTCTTCTTAGACTGTATTTCTCTTATTTGTGCCTCAATAGCTT
CATGAGTCCTGGGTATTTTATCCATATTTAATAAATAATCGACATTTAAACTTAGTGTTG
AAAGAAAAATTAAGTTTTTCTGATAATTATTTGTAAATGTAGCCCAAGCGTGATTTG
(4197 bp)

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