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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaMG_comp26289_c0_seq1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_loquacious_isoform_X5_[Bombyx_mori]
Ontology
GO:0003723 F RNA binding
GO:0003725 F double-stranded RNA binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006468 P protein phosphorylation
GO:0016020 C membrane
GO:0019899 F enzyme binding
GO:0030422 P production of siRNA involved in RNA interference
GO:0031047 P gene silencing by RNA
GO:0031054 P pre-miRNA processing
GO:0034599 P cellular response to oxidative stress
GO:0035196 P production of miRNAs involved in gene silencing by miRNA
GO:0042473 P outer ear morphogenesis
GO:0042474 P middle ear morphogenesis
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0044822 F RNA binding
GO:0048471 C perinuclear region of cytoplasm
GO:0048705 P skeletal system morphogenesis
GO:2001244 P positive regulation of intrinsic apoptotic signaling pathway
Transcript
Level		FPKM:19.59 TPM:16.49
ORF EntryO_TrvaMG12075_complete:A_TrvaMG_comp26289_c0_seq1
Sequence
(Nucleotide)
AAAAGTTACGTTGACCGAGTTATTAATTTTATTTCTGTGTAAATTATCATCTTATTCTTA
TCTTGTTGGTGTTTAAGTTAATTCCACGAATATAAATAAATTCTATTGATAAGAGTGTGG
ACTTAAAGATGGAAGGCAACACTGGTGTTCACCCGCATCCTCCGGTGGCTCCAGGGATGC
CTCCCGGGGTGATGCCCCACAGCATGTCAGTCCACGGTCCTAGCGGTCCCAACGGGGAGC
ACGTATCACACGCCCCAAGGCGCCGCTACCAGAGTCGACCGAAACCAAACAACCTGCAGA
GACTGCCTTTGGACGAGGCCGCCAAGAGGGAAATGGAGTCTCTTCCCACAAAAACTCCAG
TGTCAGTTTTGCAGGAGTTGTTGGCACGTCGCGGAACTGTACCTAAATATGAACTGGTCC
AGATTGAAGGCATGATCCATGAACCCACTTTCCGATACAGAGTTACTGTGGCCGATTTAG
TTGCAATGGGGACTGGTCGTTCCAAGAAAGAAGCCAAGCACTCCGCAGCAAAGGCCTTGT
TAGATAAATTGACCGGTGCTACACCAGCTGACCAGGGCACCAATGGTACCGTGCCAGAAA
CTGGTGTTGTTTTACCATCATTTGAAGATAAGCTGATGGGGAATCCCGTGGGATGGCTTC
AAGAGTTGTGTATGTCTAGATTTTGGCCACCACCATCGTACCATGCCGAAAATGATGACA
ACGGCAATAGACGTCTACCTCATGAGCGTCAGTTCACCATCGTGTGTACTTTGCTGAAAC
GCCGTGAAGTTGGCACGGGCAAATCTAAGAAGTTAGCCAAAAGGCAGGCCGCATACAAGA
TGTGGCAAGCTCTCCAGGACAACCCTCCAGAATCGTTCCAGACCGATGAAGAGGGTGTTG
CGGCCCGTTATGCCGACTTGAAAGATAGTAAAATCTCCACACTTACTACAAGTCACAGCC
ACAAAGTATCGCAGTTTCACAAACACCTCAAACAATCCGTTGGCCCCAACCTGGCCAAGT
TGCAGGTAACACCACTCAACAACAAGGACTTCAACTTTGTGCAATTCCTGCAAGAGATTG
CTTCAGAGCAGTCATTTGAAGTGACTTATGTGGACATTGAAGAGAAGTCTATGACGGGAC
TGTGCCAGTGTCTCGTCCAGTTGTCCACGCTGCCGGTGGCGGTGTGCCACGGAGCCGGCC
TCACCAGCAAGGACGCGCAGTCCTCGGCCGCTCAGAACGCCCTGGAGTACCTCAAAATTA
TGACAAAGAAGTGAAAACTCAACATCTGACGACATCAGTGGAAGTCAACGTAAATTATGC
ATTTCACTTCTGGGCACCGCACACCCATACCGTGAAATTAAATACTAGCGCGTCACACGA
TGGGCTTTCTATTGATGTCGTTAGGTTTTGAGCCATCATGTTATTGTATCACTTTCCATA
TGAATAATGGCATTAAATAGTACGCCTATATGTACCAGTAGTACTTTGGGCTATGCTTTA
TAACTGGCATGTTTGCAGTATCTCACTTGTGATATTTCATATAAGATTTCACAGAGAGAA
CAGTGCATCTTTACGATTACAAAAACAATTATGCATGTGAATAGTTTTTGTATAAATAGA
ACTTCATAGCCACTAGATTTTGGATGCATGTTAAATCACCAGTATGAGTTGGTATTTTAT
TCTAAATATCTTTCCAGAGATACAATTTAATTTGTATTGAAACTCATACTGTTGATTTAA
CACACGTCTAAAACTATCAGCAGAATGATTTCTATATAGGGAGATCCACTGTTGTTTCTG
GAGTGTTTGATTTGCTCTTGGTATCATTAAGTATTCTGTGAATGTAACATAATTTGCTTG
AATAAGCCACAAATTTCTAGAGGAAACATTTCATAGTATTTGCACTTTTATAGAAATAAA
AAGCAGATTATTGTCTCTTACTGTACCAGGAGCAAAGAATAACTACAAACTGGTATTTGT
ATGGTACAAAAGATTTTGTCAATGCAGTAGAAATTAGTAGTAGTAAAATACTATTTTTGT
AACGGACCCGACAAATCAACCTATACTAATTTAATGTAATAATTATATTTGAAGTATTTT
GCAAAGTGATAAGGAAACTTATTCATATCACAATTGCAAAATTATCATTAAAATATATTT
CCTAAACTCAACTTCTTCTACAAAAAAAATAAAATCGAAGAACCAAAAAATTGTACAAAA
ATTTACAAATTTCTATTAAAAGCTATACAAATTCGATGGAGACATCTACTATCACAAGTA
GATCATTATTGTTAAATAAAATTACTGCCAATGTGCGAGGGTAAATTGCATAGCCCGTAA
TCTTTAAAAAACAAAGTATGGAGTGATTTGTCTTAATACAAGCTATACTTTGCATAGAAT
TAGTGTAATTTTCCCAGCGTGGAAATTACGTGTTAAAAAATGTAAAAAAAAATATAAAAA
ATATAATGAAAATACAAAAAAAGTGTGGATTTACATATATTTCCAGTTTAATATTCAGCA
TCTTAGGCATGTTTTTTGCATTCATATTTAATTATAAAAATATTGTAATGTAATCTTGTT
TCTTAGCTTTTAATCTATTTTATGTATTATATTAATATTGCGGCCAAGCCAATACCTTGG
ATTTTTTCGTAAATGCGTATTTTTACGAGTTTAAATTTTGAAGCACTTGATTGTGCAAGC
CATTGTAACATGCTGAGCATTAAACGGAAACGATTCAGCTAGCGTGTCTTGTTGACGAAC
TGGCCAACCTTTGCTTTGTAATAAGCTCCTACGCTATCGACTCACTTCAACTTGGAAGAA
CTTCTTACAAAGCGCAAGGGTTGGAACGATTGTATTGCAGGGTTACAGGTCATTATTCAT
TTTTGTTTAATCCCCGTGATCGTTGGTTTTCTTTTGTGTACATGATTGAAAACTTTGCAG
GGAAGTTAAAACTATGCGTTTGAGTGATATTCACTGGAAAGAGTGTAAAGAGGGGGGTCC
CTTGCCTGTGAAAATGGGCATTATTTTAATGCAAAGTATAGAGGTTGTAACAATTAGTAC
CTGTACAGTGTCGTCGTCGATGCGGTCTCTGCAGCGACGAGGATCCTGCACGCACCAAGT
TTCTTTTAAATTGAATGGTGTGAGTTCAACCTGCCTTTGTACTACATTCGCACTGTTCAA
GTTAGAAAAGACTACTCGAGTAAAGGATTGGAGTTCTGTTCAACCAAGACCAACTAAATA
AAAACAATTATGGTCCGGCCGTAAGGACAGCGTTGTCTAACATTTTATTTTTTTCTTTAG
TGAGTCTTGGTTCTACTTATCGTTATAATTAATTAATATTAAGCTCTACTTAAATATATA
ATATTATCATGCTTTTAACGTTATTCACATCAGCTATTTGTATGAAATCTGTTAATCCAT
GATGAACTAAGTATTGTGTTTCGTTTCTGTTCTAACTTCAATAAAATTTCGGTGTTGCCT
AA
(3482 bp)

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