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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaMG_comp26281_c0_seq1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_transcription_elongation_factor_SPT6_[Bombyx_mori]
Ontology
GO:0000176 C nuclear exosome (RNase complex)
GO:0002805 P regulation of antimicrobial peptide biosynthetic process
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005634 C nucleus
GO:0005703 C polytene chromosome puff
GO:0005705 C polytene chromosome interband
GO:0006139 P nucleobase-containing compound metabolic process
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0008023 C transcription elongation factor complex
GO:0030707 P ovarian follicle cell development
GO:0032784 P regulation of DNA-templated transcription, elongation
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0035101 C FACT complex
GO:0035327 C euchromatin
GO:0035363 C histone locus body
Transcript
Level		FPKM:7.42 TPM:6.25
ORF EntryO_TrvaMG12057_3prime_partial:A_TrvaMG_comp26281_c0_seq1
Sequence
(Nucleotide)
GTGCGAGCAGCTGCAGCGGCGGCGGCTGCGCGGGCGGCGGCACTGGCGCCCGAAGGCGGC
GGCGGCTCCCGGAAGTGCTCTTTGAACCACTTTAATAGCCCGGAAAGAGAATCAAACATC
CTCTGTCTAAACTTGTACCCGTCCGGCGACACGGACACGTATTCGTGGGTGACTCGCGCT
CGCGGTAAATACGATAACAAGAACCTCCCCGGATAATTCTTTGAAGCAGAGATCACGTAA
TGAATTTTATTAGGATTCTTAGCTTTCTCTTCTTTGAGTAGTTCCTCTGCCTTATCCCTG
ATTCCGCCGAGGGGTTTGTAGTATTTGTACGCTATGAGATCTCGTGCGTGTCCCGCCATA
GGTGTCACGTGACGCGCTATAATTTCATCCAAATCTTCAAATTCAGACCCCTGTATCCAT
AGACTTCGACCTAACGAGAAAGTATTTTCTTTACCCTCCTCTCTTACGTCAATGTGTTGA
TAAATTCCGTCTGTCACTTTCCATGTTACGGTCAAATGATCAGAGCCCTTACTACTAGGC
CTGACAATAACTTCTCCCTGCGCCATCTTGTCCATAAGTTTCTCCGCCTCTGCAAACGAT
ATGTTATGGAAGGCGGGATGTACGATGACGCGTTTCACGTATTGCATTCGATCTTTGTTC
TGTTTCGCGTCCTTTTCTTTACGAATATCTTTGTCTTCTGATTCTTGATCGTAGTACGGG
TCTTTTGAAGGTCTCCACTCTTTATTCTTATCCACCAAATCCGATGATTTAGAAGTGCAG
TCAACTGAAAACCGTTCGACATCAATCTTTATAACCCGACAATGTACGGTTTGTCCTATC
CGTACTCTCTCCGTTGGGTCTGTGACATGTTTGTCGGATAAGTTCTTTATATGTATATAT
CCGGACAGACCATTGTCCAGTCTTATACGGACACCTGTAGCTTGGCCCGGACAAGCTCCT
GCATCGAAATGACTCCATACCTCAGACAATTCGGGGAAATCGTTCTTAAAACAGAATGGA
CACTGCCACAAGCCTGTTTCATCGTTCCTGACAGGCGTGGCTTGGTCGAGCATTTCTCTC
TGCGGTTTCCTGTGAGTGATCCCAACAACAGAAGCCAACACCATTTTCCCCACATATAAA
GTATCAGGAGACTCTTTGGTTAAAATATCGAATAATTCTTCAGGGGTAGCCGAGCGATAT
GGCACCCTAAGGTCTTTATACCTAGAGTTCAATTCCGCTCGAATATCGTACAGCGTTATG
CTTTTATTACCGAATCCTTGCCTTTCTAATTCTTCAGCGAACGCGTCTAAATCAAGGTCT
TTCAGTCTTTCTGGTGCTTCTAGGATTTCTTCTAAAGCTCCTGCGGGATTGGCGTCTTCA
TCTTCGTATTCCAAAGCGTCGACCGCCATCTTGCGGGCCCATTCGTAAGTCTCCGGATGT
ACTCTTGAACCATCGAGTACTTCTATGTAAGCCTCAGTACTATCACCGAGGCTGTTTGTA
TCAATTTTGATGAAACCCGAACAGTTGATGAACACTTTCGGTCCCATGTGACAAACTGTG
ACCAATTGCGTTCTGTTTTCTAGTTTCTGATTGGTTTGCTTGAAGAGTTTTATCAGTGCT
TGGGCTTTTCTCGGTCCAAGACCGCACACGTATTGTAGTAATTCCGTTCCTCTGCCCGTA
AGTACCGCCTCGTTCACATCTACACCGACTTCGTTGACTCTGTTCACGAATTCTAGTTCT
ATTCCTTCTAGAAGATCGTCCTTAGCGATCTGGTCTTGTAAGGGATGGTATCGAAGACAG
AGGATTTCTTCATCGGGACCGCAAAGCTGTGATATCTCCATTAAGGGGTCTTGTAGGAGA
CGACCTTGACAGACTGCTTGTCTTAGTATATCTGGGTACTCTCGGAAATCGTTCCGTCCT
CGTATACTATTGCTATATATTTTGCTGAAGTGATTGTCGGCTATCTCGATAGGTATCCGC
GGGAACTGTTCATCTTCTACTAGCTGTTGTACGCAGTCGGACACGTCCACTTTTATATTG
AGCGCTTCACGAGATTCACCGCCTATTACTATCACGTGCGGTTTCTTTTGTAAAATGAAC
CTGCGCAACGCTGTCATATCAGCCTCCTTGTTCTTCCGTTCGAGTGCGTCCCAGGCGTTC
CGTCGGTACAGCAGATGCGGCAGGCGCAGGTGGTCCGCGACCTCCCCGCCCGGCCCCACC
ACGCACGCGAACGCGCTGTGCTGGCGGTCCGGGACGTACGCCAGCGACATTACACGCACG
CCATTTGAGGCATCCCACTCTTCGTCGTCATCATCAGACACTCTGGACTCGTAGGGCGCC
ACCTTCAACCAATCGTACAATCTGCGACGACAGCATTTTAACACGTAATCCTTAGATTCC
TGCAACAGTACTGCATGTAATTCTCTCCTCAACTCCGGCATCACAATCTTGGTGAGGGCT
ATAGTGACAGCCTCCGCGCGGAGTTCATTCCACGCTTGAACGGTCGCCGCAAACTCATCC
TTTTGATAAAGTTGTTTAAGTTCTTCCAAATAGCTAGAGCTGGTGTTTCCTTCTATTTGT
TCACTGATAGTTACTACGAGGAGTTTGTCTTCAGCTGCCATCGTCAATTTGAGAAACTGA
TCTCCGGTCAAATCACGAACTGGTTTCTTCTTTAGGTATTTTAAACCAAAACAAGCGTGG
TTCTCGTCGATCTCCTTCAAGCCCTTAGGCGTGGGTTTGACGGAGATAGTGGCCCTCTCT
CTAAGGGCGTCCCTGAGAGTGGCTCGAAGGAGAGGCTCGCGCGCCAGCTGCACGCCGCAC
ATGTACACCGCGCGACGCAACACTTCCGTCGCCGAACCTATTGTAGCTACGTATTCAGCG
GCGGCCTCCAGCGGCGCGACGGGTTGTTGTTCCACCTCGTGTCGCTGGTAGTTGTCGCGC
ACGTTCTCCGCGAACTGCTCCGGAGTCAAACCGAACTTTCGGACTAGGGGCTCAATCCCA
GCCTTCCTGCACAGTTCATAAGGTCCTGATTTGGCCGCGTACTTGACGTCAGTTAAGTCC
TCTTCATCGGGTTCTATAGCTTCTACAGCCGCTGCGGCCTCCTCGGGATCTTCACCGTTT
CTCTCAGCCTCTTCGCGAGCTATTCTCTTTCTTTCTTCAATTTCCTTCTTACGTTCTTTG
ATACGTTGTACTTTTTGCATTTCGGGTAGTTCACACGAATAGTACAGTAAGAAATGGGCG
TGCACGTCACGTAATTCCTCGGGTGTTTGAACACCTTTCAGTCTTTCAATATCTTCATCT
TTAATAAGTCTCATGTTCTCGGGTATGGGAGCGTCAGGATTCTCCATCACTTTGTCCAGT
TGATAGTCTCGCATATTCTCGAACAATTTGAGAAGATTTTCTTTACGCTGTTTTAGTTGA
CACCACTTAGCATCATATTTGTAAACTTTCCACAAATCGTTTATACTGAGTTCCGGTTCG
ACATATTCTTTACGATAGAATGCTATGAAAGGCACTTCAAGTGTTTGATTCCGCATAAAA
TCGAGCGCTTGGCGAATCTTTGTTATAGTACTTGAACCTCGTCTCGTCCGTTCCCTGGCC
TCCTGTGCATCCGCCTTGGACACGGAAGGCTTGAGGAAGGCCTGCTTGTATATCCACTCG
GCTTCATCTTCCAGCTCGTTGCTGCCTTCCTCCACGGGAGTTATAGGCACTTCACGAGTC
TGCATTCTCTCTGGTACGTCCGTTTTACGAATCTCATTGTCCAAATCAGTAAAATGACTT
CTCTTCAATTCGCTGGGTTCATATATTTCAAAGATAGATTTCTTGCTCGGTCTTTTGGCT
TTACCCTTCTTAGTTCTCCGTCTTTCACCTTCTTCTTCATCATCCTCAATATATTCATCC
AGATCCTCATCATCTTCATCCTCGTAATCCTCTTCACCATATTTCTCAAACTCATCATAG
TCAAAATCTACACCAAATATATCTTGACCTTCTTGTAGCGAAGCATCAGTGAATATAGGT
TTACGTTTCTTCTTACGTTCTGCTATGGGTCTACCATCATCATCCACAATGAAGTCATCA
GCATCTGATTCCAATTCCTCATTTTCATCGTCATATTCTACTTCACCTCGAGGAGCAGCA
GTGTCAGACCGATTTTCATCTTCATCATCAGAACCTCCAACAAACAGTTTCTCGGCAATG
ACCTCCCTTTCAAGATCAGGGTCATCCGGTGCTTCATTGTCACTGTCATCATCTTCCAAA
CGACGAAGACGTTTGAATTTATTTCTTGCAACTTTAACACCAAGATTCTCTTCAATAAGA
TCATAATCTTCATCTTCAAGTCTATCATCAAGTTCGTCATCACTTTTTTTTCGTTTTTTC
GGTCCGACACTGGCATCTGAATCCTCACCATCACTACCTGATTCCTCTATTGGTGCATCA
TCAATCAAATCTTTGAGCTCTTCACGGAGTCGTTCCTCGTCATCTTCTTCTTCTTCGTCT
TCGTCGTCACTTTGAACGGCTTTTCTTTTGTGTTTCTTACGTTCTGCTGGCTGTTCCTCT
GCCTCCGAATCCAACTCGCTCTCCTCCGCCTCGGATTCTAGAAAGTCTGACATTTTAAAG
TTAAACTAGAAACTCGCTACAAACTAAAATCACGATAAATCTAGGCTTAAGTTAAATTTT
AAACTACATAAAAAGTTAAAATTAAGAAAATAAAAAGCTTATCGTTTACAGTTTTCACGA
AAATGTCAG
(4749 bp)

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