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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaMG_comp26200_c0_seq3
Scaffold_id
NCBI non-redundant
(nr)		putative_UPF2_regulator_of_nonsense_transcripts-like_protein_[Danaus_plexippus]
Ontology
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0001889 P liver development
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006406 P mRNA export from nucleus
GO:0031100 P animal organ regeneration
GO:0035145 C exon-exon junction complex
GO:0042162 F telomeric DNA binding
GO:0048471 C perinuclear region of cytoplasm
Transcript
Level		FPKM:0.55 TPM:0.46
ORF EntryO_TrvaMG11851_5prime_partial:A_TrvaMG_comp26200_c0_seq3
Sequence
(Nucleotide)
AAAAATGACTGCTACGAACAATGAGGAACCAAGTGAATCCGCACCAGAGGATTCATCTAC
AGCAGAAGAAAATGAGAAAGCGGCTGTTGAAGAGTATGCAGCTAGCTTAGAAGCCAGGCT
AAAACAAAAACATGAAATACGTAATCTTAATCTGAATTGTACTCGCCCTCCAGAAAATTA
TTTTTCCAAACTAGATTCTGGCCTGAAGAAGAATACAACATTTGTCAAAAAACTAAAATC
ATTCAGCGCCTCTCAACTGGATGCACTTATGAAAGACTTTGCTACTTTGAATCTAACTAA
GTACATATCCGAGGTGGCAGCTGCTATAGCAGAAGCAAAACTAAAAATGTCTGATATTCC
TGCTGCTATAACTCTTTGCTCAGCCCTTCATCGTACCTATGCCGAATTTTCAGCAAGCTT
CTTCGAAAATTGGCAAAAAATTCTTACATTCAAAGCTACTGATAAAATAACAAATTCATC
AAAATTGAGAGTGGACATAAGGTTTTATGCAGAGTTGGTATCTGTTGGTATATTTATGAA
TAAAACAGGTTTGCCCCTTCTCGGCAATGTGTTAACTGTTCTAATAAACATGGATAAAGA
AGAGCACAACAATATACCAATTTTATTATCATTTTGTAAGCATTGTGGTGATGACTATGC
TGGACTAATGCCTAAGAAGATAAGAGAAGCATCTGAAAAATACAATATACCTGTGCCTCG
GAATACATTTCTTCCAGCAGAAAAACAGACTGCTGTGAGAACCCTACTAAAAGATTACTT
TCTTTCTCTAACCAAACATCTTTTGGCTGAGAGAGCTCAGTTACAAGCTCTCCATGCAGC
AAACCAGAGAACTCTACACACTAGGGGAGAACTATCGCAGGAGAGAAAAGAACAATTGGA
ACAACATCAAACCACGTATGATAAATTGCTGGCGAATGCTCAAAACTTTGCTGAAGTACT
GGGTGAAGATCTGGGTGAAGCTGGTGAACCACCCACTCTTAGTCTCACAGTGATTGAGAC
GCAAGGAACTGTGACCATCGGAGGCAACGAGGACATCATGATGCAGGCAGGAACAGACCC
TTGGCCTGATGAAGATTCTAGAACATTTTACACAAGCTTGCCAGATTTGAAAGTTTTTAT
GCCTAATTATCAAATGAAAGAGACTGTAAAAAGTAAGACTGAAACAGTAACAGAAGAAAT
GTTAGATGAAGATCTGAAGGAGGATGAACTGAGTGACAATGAGGACACACCTGTTGTTGC
AGAACCAGAAGAGGTTCAACCAACTAATGTATCTAATAAACAGGGACTTGACACATTCTT
GAATGAACTACCAAACTGTATAAATCGTGAACTTATAGACAATGCTGCTGTTGATTTTAT
ACTGAATCTCAATACAAAGAATCATCGCAAGAAATTATCAAGAGTTCTGTTCAGTGTTGC
TAGAACAAGATTGGATTTATTACCATTTTACTCAAGATTTGCAGCAATTTTATATCCTGT
ATTACCAGAAGTTTGTGTTGATTTATGCCAAATGTTAAAACAAGATTTTAAGTTTCATGT
CAAGAAAAAAGATCAAATAAATATTGAATCTAAGATCAAAGTTGTGAGATTTATTGGAGA
ACTAGTCAAATTTAATTTATATTCGAAAATGGAGGCCTTGTATTGTTTGAAAGTGCTGTT
ACACGATTTTAAACATCACCATATAGAAATGGCATGCAATCTGCTCGAAACATGTGGAAG
ATATCTATATTGCAATCCTGATACACATCAAAGGACTATGATTTATTTACAGCAAATGAT
GAGAAAGAAGACTGTTTCAGCTCTCGATTCCCGTTACGTAACACAAATAGAGAACGCGTT
TTACTACGTTTGTCCTCCTGAAACACCTGTTCAACCCAAGGAAGAAGAGCCGCCGCTACA
TCAGTTCATAAGAAAAGTGCTCCATGAAGATTTACAGAAAAGTAACGAAGAAAAGATATT
GAGACTAATGCGTAAATTGAACTGGGATGACCCAGAGGTGTCTGCAATAGCTATTCAACA
TTTAGCTGGAGGCTGGCGGGTCCGTGCCAGTGCCAGAAGAGCGCTTGCCAGACTCACGGC
CGAACTCGCCATCTGGCAGGAAGCTGTAGCACCAGCAGTTGTTGACACCATCTTAGAAGA
AATACGACTAACCATGGAAGACCCACACCCCAGATATAACCAGAGAAGGATAGCTACAGT
ACGGTATTTAGGAGAACTTTATAATTACAAGTTACTGGATTCACGAGACGTTTTTACTGT
TTTATATTCGTTTATAACATTTGGTGTGACCAATGAGCACGGGAATGTCTCTCCTTTAGA
TCCGCCCGATAATGTCTTCAGAATTAGATTGGTCTGCGCTCTTCTTGAAACTTGCGGTGC
GTACTTTAACAGTGGCTCAAGCAAGAAAAGATTGGACTATTTCCTAACTTTCTTCCAAAA
TTATTATTGGTTCAAGTTGTCAGACCCCATTTGGACAAAAGACTATCAGTTTCCTATTTA
CGTAAAGTACATTTATCAAGAATGTCTAACGACGTTACGACCCAAATTGACTTTGTTTAC
GAGCTGGCAGCAATGTAAGGATGCTATAGATGAACTGCGACAAGCTTTATATCCAGAATT
AGGTGAAGAAGAAAATGATAACGATGATCAAGGAGACGACAGTGTGAACGATGGCTTAGA
TACGATTATAGAGACTGATGATGAAACTGACAATCCTCAACTGCCTGATGAAGAAAGTTC
CGATGACGAACCAATCACTGAAAATAATATAAATGATGAAAACGAAATTCAAGATGAAAT
AACAATTGAACCACGGAGACCGGCTTCTAAAGTTGTGGAAGACGTTGAATTTGAATCGGC
ATTCGAGAAAATGGTGACCGAAAACATCGCAGAGAGACAACGTGAGAACAGACCGCAACA
ACGAGACATCGCCGTGCCCATGACCTGCAGACAAACTACCAAGAAAACTTACGAACAATT
ACTGCAAGGTAAAGAAGGCGTAGAGTTTGTCCTCATGGTTCGTAAAGGAACGAAACCGCA
GTATAAGTCATTCAGCGCCCCGCCGGAACTCGCTAGCAATCTACAACAACAGGCCCTCGC
TGACAAACAAGAAATGGAACGAGTTAAACGGTTAACACTTAACATATCGGAACGACAAGA
AGAGGAGGAATACAGCGCGGAGAGCGGAGGCGGCTCCGGCGGACTCGGCAACCCCAACAG
AGGGCAGCACGTGCGACAGAAATACCAACATCCTAAGGGAGCGCCCGATGCAGACCTTAT
ATTTGGACCTAAGAAATTTAAATAGATTTTGCTAAGGGGTTGTCCATTAATCACGT
(3356 bp)

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