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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaMG_comp26171_c0_seq1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_pre-mRNA-splicing_factor_RBM22_[Papilio_machaon]
Ontology
GO:0000060 P obsolete protein import into nucleus, translocation
GO:0000166 F nucleotide binding
GO:0000387 P spliceosomal snRNP assembly
GO:0000974 C Prp19 complex
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005487 F structural constituent of nuclear pore
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0006810 P transport
GO:0008380 P RNA splicing
GO:0017070 F U6 snRNA binding
GO:0033120 P positive regulation of RNA splicing
GO:0035690 P cellular response to xenobiotic stimulus
GO:0036002 F pre-mRNA binding
GO:0044822 F RNA binding
GO:0045292 P mRNA cis splicing, via spliceosome
GO:0046872 F metal ion binding
GO:0048306 F calcium-dependent protein binding
GO:0071006 C U2-type catalytic step 1 spliceosome
GO:0071007 C U2-type catalytic step 2 spliceosome
GO:0071013 C catalytic step 2 spliceosome
GO:0090316 P positive regulation of intracellular protein transport
Transcript
Level		FPKM:11.66 TPM:9.81
ORF EntryO_TrvaMG11704_complete:A_TrvaMG_comp26171_c0_seq1
Sequence
(Nucleotide)
TTTTTTTTTCATATTACAAACTTTATTGTACAGATTGTCACATATCTTAACCATAATGAA
ACTATAATGTCGCCCGATGCTATATTTGCGGCGTGTTTGTGTGCGCATGCGCGCCGAGCC
TGGCGGGGTCCTGGCTCGGGTAGTGCAGGCGCAGCGGGGCGGGGGGCGGCGGAGGGGGAC
CCCATCCCCCCCACCCGGGACCGCCGTAGTGCTGCAGGTTGAAGAAGTCGTTGGGACGAT
TCGGTGGCGGCGGCATCTGTGGTGGGAATGGATGTAAATAGGCTGGTGGCGGCGGCAGTG
TTCCCGGCAAACCAGGCACAGGCTCCAACATGGGAACTTCCTCATTCTTCTCATGAACAC
CTTGGCGACCTTGTGATTTGCCCCATTTGATAGTTAGTCTCTTGCCAAAGATAACAAGGC
GATTGAATGTCTTTTCAGCGGCAAGTTCCGCAGCACTCCTCGTAGTATATTGAACAAAAG
CACATTGAGCTCTTGGCACTAGTGTTAAGCATCTTATTTCACCATATTGATAGAAATGTC
CTCTGAGTTCGTCCTCAGTGACATTGTCAGGTAGGTTCCCGACGTACAGTGTGGTAACTG
TCTTGTCTTCTGGTGGAGGTAATGCAGGCATGGCCGCTGCACGACGCATTAGCTTTTCAG
CTACGGGGTCATTAACTCCGTAATATCTGTCTTTGATATTTTGATCCGCCAATGGATCAT
CAGGGTCAGTTGGCTTCTCATGACGGTAGGGACATTCTTCCCCTCTCCTACACTCCCCTT
TCACCCAGAATGAACAAACATGTGGCCTATTTCTCTTATAGTACGGAGCAGTACGGGCCA
ACCGTAGCAACAAATCTGAAGACCCTTTGGACTTCAAAGAACTGCTTGGCTGGGTTGGAT
CAGAGTTGGACAACTGACCCTCCAAATTCTGAATATAGTATTCTTTATTCACATCATTCC
TAGGAAGATCATCTTGGATTTTCAATGCTGCATCCCTCACTTGAATTGGCAAACCATACT
CCAAGTCCAACAAACATGTTTGACAAACATTTTTCAATTTGGAACACGTCTGACAGATCT
CGGTTTTTTTGAAACGCATCCGCGCTCCAGGACACCAGCGGAATACAGTGAAGGGCCTCG
AACATATTTTACATTCTTTGCCGTATTTTTCTTTTGTCATCCTAATGTAGGGGTTATCTC
CAAGACATGTTTGACACAATATTGGGAAGTCAGCATCTTCCCAATTTTGTCGATTGTACG
TGTTTGTTGATTTCGATGTGGCCATAACGTTAACTGCTGTTCAAAGCCTTTGAACTTTTA
AAGATGAGAAAACCAATGATTTTTTTTTATTTTGAAACACTTTTTAACAACCTACTAATT
TAAAATTTTAGAAAACTTGAGATAAAGAGCAACCCATTCAAGAAAACACCATTTTTTGCT
TTTTTTCTGAGCACAGATCAGAAACTATATTACAG
(1475 bp)

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