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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaMG_comp26165_c1_seq1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_regulator_of_nonsense_transcripts_1_homolog_[Amyelois_transitella]
Ontology
GO:0000166 F nucleotide binding
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003677 F DNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0008270 F zinc ion binding
GO:0016246 P RNA interference
GO:0016787 F hydrolase activity
GO:0035145 C exon-exon junction complex
GO:0035195 P gene silencing by miRNA
GO:0046872 F metal ion binding
GO:0071456 P cellular response to hypoxia
GO:2000624 P positive regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
Transcript
Level		FPKM:14.59 TPM:12.29
ORF EntryO_TrvaMG11692_internal:A_TrvaMG_comp26165_c1_seq1
Sequence
(Nucleotide)
GCGGGCGGCACGGCGGCGTGCAGCAGGGCGCCGCGCTCCGGGCCCACGTAGGCGAGCGGG
TCGCGCGGCGGACGGGCGCGGTCGTAGATGGAGCCCGGCACCATGGCCTCGCGCGCGTCG
AACATCGACGTTGACATGAAATGGGATCCGGGGTTTTGAGAGTTTACCAATTTTTTCGGT
TTTGCGAATTGAATGGCAGATTCTTTCAGGTTAGAGAGTGGTCCTTCAGTGAGCACGCGA
CGTTCTTTATAGAATGCGAGCAAGTGGTTCCATAGTGGTTGCTTGCTAAGAACTTTAGGG
TTTCCAACAACAATGAGACCGTATTTAGCACGAGTGAGGGCGACATTAAGCCGGCGCGGA
TCGCTTAAGAACCCAATTCCTTGATGTTCGTTAGATCGCACACATGACATTATTATTATA
TCTTTTTCCCTGCCTTGGAAAGCGTCGACACTAGCGACTTCGATCTCTTGATATAATTTA
GCGTGTAAACTACCTTGATATTGCATATGTTGCACCAGATAAGATCGCTGGCCCTCGTAA
GGAGTTATTATACCAATTTGTTCAGGACGGACGCCTGCTTTTAAGAAACGGGTCGTAAGT
TTCTCAACATTAGCAGCTTCCGTTCTGTTTAAGTAAGATGTGCCAGAGCCAGCTATTTCT
TCTTGTCCCTGTGTTACATAAAAGAACATAGGTCTATCAGGTCTTGGCCATGGAAAATCG
ATTTTCTGCAAACGTCTTTCTTCGGCGCTAACTCCGTTTTGCAATGACCCTTCATAAAAG
AAATCCGACGGAAAACGGGACAATTCAGGGTGCATACGATACTGCACTTCAAGTCTGAAA
GGACGGATTCCAAGAACTACTAATCGTTCGAAAAGACTCTGACTGAGACCAGCCTTGGCA
GCCTTCTTGCACATAACGACGGGACCTAGTTGGCAGTGGTCACCCACAAGGATCAGTTGT
CTGGCTCCTAAAACAACTGGGACCATACATTCAGGCTCAGTAGACTGCATTCCTTCATCG
ATCAGGATGGACTGGAATCTCATTCGAGCAACACGAGGATC
(1061 bp)

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