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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaMG_comp26165_c0_seq1
Scaffold_id
NCBI non-redundant
(nr)		putative_nonsense-mediated_mrna_decay_protein_1_[Danaus_plexippus]
Ontology
GO:0000166 F nucleotide binding
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000932 C P-body
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0008270 F zinc ion binding
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
Transcript
Level		FPKM:9.74 TPM:8.20
ORF EntryO_TrvaMG11689_complete:A_TrvaMG_comp26165_c0_seq1
Sequence
(Nucleotide)
AGATCTCAATAGGTCTCAGGTGTATGCCGTTAAACACGCTCTACAAAGACCTCTATCATT
GATCTGGTAAATTGGGTGCGCTGAAATGTTTCGGAAGGTGTACTCGAAACAGGACCTCTT
CAACTTCGTGTCCTAAAAGACGTCGATAGATATAACCAGACACAGAAGAATCATCTAAGG
CGAATTTACGTAGTGCGAGTTGCATTCTGTCAAAAGATGTACTCTTCCAGATGAAATCGA
CAACAAAGTTGGAAGTACAGTCGAGAGGGGCACCCGCACCACTCTTGAGTTCAAGCCCAA
CATCATCACCATAGTTATCGGGAACTTTGATCACGTGACCCACGCCCGACCACGCCTTGT
GCATCTCTCCGACATATCTTAATCTGAGCTCATCACCATGCATCAGTTTCATGTCACTGT
CCGTCTTGGCTAAAGTGAAGTAAGCAATGGTCTTTTTGTTCAGACCAACATCCCAACGGA
CTTCGATTCCTTCTTGAGTTTGGGACTCTTTCAACCTCTTGTCATAATCAGCTTCCAACT
TCACGAGAGGACCAAAGATATTTTGATATTGGTAGCCATCTTCATATCTCAGCAAAACCT
GGTGAGGTTCTTCATCTACACCTGGTTTTTCTAAATCTTGGAAAGTTGCATCCACATTGT
CTCGCCATAATTCTTCCAAGCGACCTATTTGTTGAGGGGTAACCTGGCGTGCTCGCATTT
GCTCCGTTTCAGATGGAACTTTCACTAGCCACGACAGGAAAGCACGGTCAGATATCAATG
GTTTCCATTGTTCCTGGTCCCAGTTCATGTCTTTCAAGGAACTTTGTGCTGCACAAGGTT
GTCGACAAAGCAGCACCACAACTGAGTCAGCTTTGGCTGGTATAAAACCAAGCACAAACA
CATTTCGAGCACCGCAAGAGTAGCACTCCAATAAGGTTTCACCGAGTGGGCCGTCACGGT
GTAAAGCAGCTTCCTTATGCTTTGCACGCACCATATGGTTGATGATATGAGAGCCTGAAG
TATTTCCACGGCCATTGCAAAACCATTTGTTACATATGTTACACATAACAACTGTGGCTG
GATCGTGAATGCCACAGTATTTACAAGCATGATCTGGAAGTTCTTTGTTACTATACAAAG
CCTCATCCTCCTCTTCGAATTGCAACTCCGCATTCGCATTGGTTACATTAGAAACTTTGG
ACGAGAGCTCCGTACGTCCTAATCCGTTAACCTGATTGGATGTTGATAGTCCATGGTCAT
GTTGTGAAGCCTGTGTTTGGCTTTGAGAGGGCAATGTAAAGTCGGTGAACTCAAATTCAG
AACCTTGTGTGTCAGCTCCGATAAAATCTCCTTCCTCAGTTTCCAAAAACGTGAGCGATT
GCGAGCTCGGGTCGAACGCTTCAACACTCATACTTCACGATAAAACTAGATTTATACAAA
ACAAGAAAACTAATCAAAAAGAAAATATTTTGTACGACTATTAAATGATAATTCCATAAC
AATCACGCAGTAATGACATGCATAGAGTGACGAGAATTCGACATGTTAACAATTTCAACA
CATGGTTTGTTTCTTTTTCACCTTAATG
(1588 bp)

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