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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaMG_comp26164_c1_seq1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_CCR4-NOT_transcription_complex_subunit_7-like_[Amyelois_transitella]
Ontology
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0003676 F nucleic acid binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004535 F poly(A)-specific ribonuclease activity
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0006977 P DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
GO:0008284 P positive regulation of cell population proliferation
GO:0008285 P negative regulation of cell population proliferation
GO:0016787 F hydrolase activity
GO:0030014 C CCR4-NOT complex
GO:0031047 P gene silencing by RNA
GO:0035195 P gene silencing by miRNA
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
GO:0046872 F metal ion binding
GO:0061014 P positive regulation of mRNA catabolic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
Transcript
Level		FPKM:2.35 TPM:1.98
ORF EntryO_TrvaMG11688_5prime_partial:A_TrvaMG_comp26164_c1_seq1
Sequence
(Nucleotide)
GCAATTTAACTTTAAATTCAATCTTCAAGAGGACATGTATGCTCAAGACTCAATAGATCT
ACTTCAAAACTCTGGTCTTCAATTCAGGCAACATGAAGAACATGGTATAGAACCCCTTGA
ATTTGCTGAACTTTTAATGTCTTCTGGAATTGTATTAATGGATAATATCAACTGGTTGAG
TTTCCATTCTGGATATGATTTTGGCTATTTACTTAAATTGCTCACTGATCAGAACTTGCC
TCATGAAGAGAATGACTTTTTTGAAAGATTGAGACTTTATTTTCCCACCGTTTATGATGT
CAAGTACTTAATGAAGCTCTGTAAAAATCTAAAAGGAGGTTTACAAGAAGTTGCAGATCA
GTTGGAATTGAGACGTGTTGGCCCTCAACATCAAGCTGGGTCAGATTCATTGCTGACTGG
AATGGCATTCTTCAAAATAAAAGAGATATTTTTTGATGGAAACATTGAAAGTACAAGCGG
ACACCTCTATGGACTTGGAGCCCCATTCACTAGTAACACTAATAACTTTCAAGATAATGT
GGACAGTGGAAACTCTTCCTGATCTGAACCACAGTGTGAATAGAGTTTAACTCATTTGCT
ACATACCAAGGAATTAAAATTTAATAATATGTACCTGATTAATTTTCAAAACTAATAAGC
(660 bp)

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