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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaMG_comp26024_c0_seq13
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_PDZ_and_LIM_domain_protein_3_isoform_X3_[Bombyx_mori]
Ontology
GO:0001725 C stress fiber
GO:0001952 P regulation of cell-matrix adhesion
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005915 C zonula adherens
GO:0005925 C focal adhesion
GO:0005927 C muscle tendon junction
GO:0008270 F zinc ion binding
GO:0015629 C actin cytoskeleton
GO:0016323 C basolateral plasma membrane
GO:0030018 C Z disc
GO:0030239 P myofibril assembly
GO:0031252 C cell leading edge
GO:0045177 C apical part of cell
GO:0045178 C basal part of cell
GO:0046872 F metal ion binding
GO:0051371 F muscle alpha-actinin binding
GO:0061061 P muscle structure development
Transcript
Level		FPKM:1.32 TPM:1.11
ORF EntryO_TrvaMG11166_5prime_partial:A_TrvaMG_comp26024_c0_seq13
Sequence
(Nucleotide)
CCGCGGTCGTACTATCCGCACAAGAGTGCGCTCGCGCAAGTGCATCCTCGACCCCACGCG
CCATGGGCCGACTGCATACCTTCGTGGTCACCCTGAGAAGGGAGTCCCGCGAGATCAACT
GGGGGCTGCGGCTCGTGGGCGGCGCAGACCTCGCCACTCCACTCATTGTCACAAGGGTAT
CGCCCGGTACTCCAGCAGGCAGAGACCTAGTCCGCGGTGATATCATCGCGAAAATAGACG
ATTACGACGCACGTGACCTCCGACACGAAGATGCACAGAATCTCTTCAAGAATGCACCCA
ATCAGATTAAACTAGTCGTGCAAAGGGGCGGATCGAGTGCTCACCTGTACTCAGTACCGC
GCACGACAGGCAGCTTTGTAGGCCGAGTGCCGACGCCCACGTTTTATCACGAGTTCGCGG
AGGACGTGGATCGCGAAGGTCCGCGCGGCTCGGGCACCCCGCTGGCGCCACGCTCGCCCA
TACCCGGCTCGAGTGCCGCCTCATTCAGGACACCAAGTCCCCTGCCCTCATGGCGTGGAC
CGGAGTCCCTGCCCCGCAGCACGCCGGTACCTCCACACTACCAGCCGCAGTACGAGTCCG
ACTACAGGACGTATTTACTCTCGCCTTCTTCTATCCGCACCGATGAGACCGTCGATGAGT
CTATACAGAGTCAGCCATACCGTACGACGCCCCTGGTCCTCCCGGGTGCTAAGGTGCGAA
GAGAGCCCGGCCCTACAGAGAGCTACCTGCGTCACCACCCCAACCCTGCCATGAGGGCAC
CACCCAGCCACGACTACCGCGACACCCTTATGAAACAGAAGGTGGCCCACAAGCAATTCA
ACTCACCAATCAATCTATACTCTGACCAAAACATTGCGAACTCGATCAGGCAACAGACCT
CGCCTCTGCCAGCTAACGGCCATTACGGACGGCCGCACGTTGTCAAGAGGCAAGTCTTTT
ACTAGAAACACCGCAATGCAACAGTCGACGCTCATCTTAATGACGCATTAATGCTTTCAA
TATATCTTGCTATCTCTCGAATCTTTCAAATACGATATCCGTTTCACGCCAAGCTATCTG
TGTCTTATAAGAGCATGTCGTCGTCGTCGATCTGTTAGCACTCTCCGGACCCGCCCCGGG
ACCGTGCCCATCTGTCGCGTCCCGGGCCGGTGATTAAAACTAGTATTTAAGTTATAATCG
ATTAATAATTTAAGATATCGGACTTATTCTACATGATTAATGTTAGTATTTTTATCGACC
TGTCCTTCCTCAAACACAAACACGACTAAACGTGTCCGGCGTGCACTAACCGCTTCCGCG
TCCCCTAACCACTCCCCGGGTCTAATGTTTCTTGTCTGGCGGCCTCTAACCGACTAATAC
TAACGTGTGTGGGCGGCGTGCGTGCGTGTGTGCGTGCGGTCGGTGCGTGCTGTGTGCGTG
CTGCGTGCGGGGTGCGTGCTGCGTGCAGGGCGCCGGTGTACGACCCCGTGCAGTCGGACA
CGTACCGCGCGCTGCAGGAGGACAGCCTGCCGGACGGCGCGCCGCAAGCCTCCGCCCCCG
TCGCTACGAAGGTCTTCACGGCGCCTACCAACAAGAGGCCTACTCCGAAACCAACGAAAC
AACCCGAAGCTAAGCCGAAAGGAAAACAAACGACCTTCGTGAATTCACTACACGAAGAAC
ACATCCAACAGTCGAATTCGTTCAAACGCCTCATGTACAACGTGCTCGGAGACACCGAGT
TCTAACCGCGTCGCACGCACCGCACACTACGTCATGTTCCTAATGTTAAGGCTAACGTAA
CATTATACCGTCTCAGTAGCAGTGACGTCACACAACCCATGGCCCTCATGTGTTGCTAGT
CGACAAACATTAGTCTTGCCAACTCTTACGATGACTGAGGAAAGGATCGTGGCAATTTAA
TAAAAAATAAGACTAACATTTTAATTATAGAAAGCTATTATTGTTATCGTATTGGCAGTG
TGGAATATTTATTATTTTTCGGTGGATTTGTTTTTAATTTCTAATACTCGAGTATTAGTG
ATATAATTTATTATTTACATTAAGTAGACGTATAACGTTTAAGTGTTGAGTTTTCTGTTT
GTACAGAAATTAATATATCATTATTTATGTATAATTTAAGAAAAGTTGAGTGTAAAGTCT
AGTCACCGCGACCAGAGTTCCGGTTGTATACATAATATGTATAATGATCATTTAAATAAA
TTA
(2223 bp)

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