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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaMG_comp25968_c0_seq1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_CCR4-NOT_transcription_complex_subunit_3_isoform_X1_[Bombyx_mori]
Ontology
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 C P-body
GO:0001829 P trophectodermal cell differentiation
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0007275 P multicellular organism development
GO:0017148 P negative regulation of translation
GO:0030014 C CCR4-NOT complex
GO:0030015 C CCR4-NOT core complex
GO:0031047 P gene silencing by RNA
GO:0033147 P negative regulation of intracellular estrogen receptor signaling pathway
GO:2000036 P regulation of stem cell population maintenance
Transcript
Level		FPKM:6.36 TPM:5.35
ORF EntryO_TrvaMG10860_5prime_partial:A_TrvaMG_comp25968_c0_seq1
Sequence
(Nucleotide)
TTTTGATGGTCTACGCGACATAACATAAAATCATTTTGTGGAAAATTTGAAGTTTGTTGT
TATTTGTGACAACTTATAATTCATAATTATTTATGAAAGCTTCGTCATAATTACCTTTCC
AGGCGTAAGGCTGGATTTTTCAGTTGTGGTTAGCCTGAAAGCGATCGGACTCAATAGTTC
GAGCGGTGTACGGTAGCCATCTTGGATTCGAACAAAGCTTCAGATGTGTAGTTTGTCTGT
TTATCAATAATTTTTGTGCATTTCACTGTAAATAGTTTGTATGTTTAGGATATGTACGGA
ACGTTCGTCCATATGTGTAAATAGCTATGGCTGCGACAAGGAAATTACAAGGTGAAATAG
AACGTTGTTTAAAAAAAGTAACGGAGGGAGTTGAGACTTTTGAGGACATCTGGCAAAAAG
TACACAATGCGACGAACAGTAATCAAAAGGAAAAGTACGAGGCGGACCTTAAGAAAGAGA
TCAAGAAACTACAGAGGTTACGAGATCAGATCAAATCGTGGATCGCCTCTGGGGAGATTA
AAGATAAGAGTACACTATTAGAATTTAGGAAACTTATTGAAACACAAATGGAAAGGTTCA
AAGTGGTGGAAAGAGAAACGAAAACGAAGGCATACTCTAAAGAAGGGCTCGGGGCGGCGC
AGAAACTCGACCCCGCCCAGAAAGAGAGGGAAGAAATGTCTTCATGGCTCATCTCGTCCA
TCGACGCTCTTAATTTACAGGTTGATCAATTTGAGTCTGAAGTAGAGTCACTATTAGTGG
GTAAGAAGAAAAGATTAGATAAAGAGAAACAAGACAGGATGGAGGAGCTGAAATTAAAAC
TCGAAAAACACAGGTTTCACATAAAAAAACTCGAAACACTACTGAGAATGCTTGACAACA
TGTCTGTGGACGTTGAACAGATAAAAGGTATAAAGGAGGACGTGGAGTACTACATCGACT
CGTCCCTTGAGCCCGGCTTCGAGGAGAACGATTACATCTACGATGACATACAGGGACTTG
ACGAGATTGAACTCAGCGGGGTTGGACCTTCGACGGACTCTAATAACAGTAATGGATCCG
CTGCGACGCCTAATAGTATACTTTCTGGTACAAGTCCTGTAAGAACACCGACATCAGAAA
ACCACAATCATTCGACAGACTCAATAGATACAGGAAAGAAAAAGAAAGATGAAATAATCA
CAAAACCGGTTAAACCTCTCCCGGTGCGCGCGGTCAACGTGGGCGCGATCGGTAATACTA
CCTGTAATGTTAGTTCCTTGCTCTATAACTCCGCAGCCGCAAGCAATAGCACGGGAGTGT
CTGGAGCGTCCACGCCGAGCAAACCCGCGCCCAGTCCGCCGCCCACGCGGCCCGCTAACA
ATACAGAAGTAATCGAGAATGGTCCAGTATCAATCGCGGCGGCGGTCAACGCGACGTCGA
CGCATCTACCGCCGCCTCCCTCACAACAACCGCTACCAACGTCTCGAAGCACGTCGTCGA
GCGGCGGCGCCAGTGCGAGCGTGACCACCTCCCCGCTCACCGTCAACGGACCCACCGCCT
CCGCGCACCACACGCCGCACCACACGCCGCATCACACGCCGCACCACGCGCTCAACAATG
GACGAGTGAGCGAAACATCAAGTATGTCTGGCGTGAGCGCGTCGAGTGCGGCCAGCACGG
GCAGCGCGCAACACAACACCGCCTCACTCAAGAGCATGGCGCAGGAGGCCGTGCACCGGG
CGGGGCTCGACCTGCACCATCAGAACACGAGACGAAGTACGGCGATAGCGCAGGCGCACA
TCCCGCCGCTACTCGGGGTCGCGCCCTTAGGACCGCAGCCACTTGACTCGAGTAACCAAG
TACAGTTCCAGATGATGGAATCAGCGTTCTATCACATGCCTCATCCTTCAGACTCTGAAC
GGACGAGGGTTTACTTACCTAGAAATATATGTCGGACGCCTGAATATTACAATCAGGTGC
TATTACCCCATTCGGACACAGTGGAGTTCTTCCAACGACTATCAACAGAGACTTTGTTCT
TCGTGTTCTACTACATGGAGGGAACGAAGGCGCAGTACCTCGCGGCCAAGGCGCTCAAGA
AGCAGAGCTGGCGGTTCCACACCAAGTACATGATGTGGTTCCAGAGGCACGAGGAGCCCA
AGGTCATTAATGAGGAATATGAACAGGGCACATACATCTATTTTGACTACGAAAAGTGGG
GCCAAAGAAAGAAGGAGGGCTTCACGTTCGAATATAAGTACTTAGAGGACCGAGACTTGA
ACTGAACGCGCCGCACCAGCGCTGCAGCCGTGCCGCCTCCGCGCCGCTGCCGTGCCGCCT
CCGCGCCGCTCGACAACACTGTGTACAGAACTCTCGACGTACGACAAGTGCTCAGTGGAC
TGTGTTCGTGTGACAGTGATCAAACTTACCAAAAAGGCGTGGACAGTGTATCAACATTCA
TTACTACAATACTTCACGAGTGGATATTCCGAAAGTGTTCACGAATGTTTGCGGTTTCTT
CAAATTGTGTTGTTAACTAATTAGATAAAGTGTACCTGAAGAATTTCAAGAACTGGTATT
TATAGATGTTATGGCGATGGTTTTACAGGAAAGATGTTTTAATTGCCTCCGGAGATGAGC
GGAAGAACGTTGTCATTTGATTATAGACGATAGCACCTTCAAGACTATTGATAATGCTGT
CGATAGTTTTATATCGATGCAAAAATTAAACGTCTCGATTCTACTATCGATTACACGAGA
TTTTAATCGAATCATGAATAAATCTTTTGTATAATAGCTTTCTGGCAGTCAGTGATGTAT
TTTTTTTATAAATGAACAAAAAAAAGCGAAAGATATCATGTGATGCAGTATATTTAGTCA
GCCGTTCGCGGTCGTTAAGAACTAATGTGATATTGTTATAAGCTCGGAACATTCTTGGAT
TAATTTTAGTGAAAATGAAGAATGTATGGAAGGCAGTGCGTTTAGTTGTTAAGGAGTCCT
TTACATAGTTTAGAAATTGACTTAGCCTAGTCTAATTCCGATTTACCACCAATTGGTTGC
GATTCGATTATATTAAAGCTAGATCGATTATTATAAGTGCCGATTATCGATATTGAAATC
GATTATTTTACTTTATTCCCGTTACAATGTTATAGATCTGTATTTTTATAGTATTCCGTT
GTGTGATCTCTCATAAGTCATACGTGTTAGTGAAACTCCGAGTTTGTTCCGAGATGTTTT
TATAACTGGCTCCTAGATGTTAAATTTCGTTTTTAAGTGCGCCAATGTGTGTTTCACTTT
GAATTAAAACACTAATTAATTATCCTAAATTTTAACTTTATTTGAGCATAGCTTGTTGAT
TACGCAGAATTTGATTAAATGAAAAATTAAGTAGAAAATTGATTTTATTTCTGTTCTTTG
TGAAACATACATTATGCCTCTGTATAGTTTATCAGTTAGGTAAAAACAGTGTGATTAGTT
TGTTTGTTTGTTATACGCTTTTACATCTCGAATTCACTTTAACAAGGTGTATTTAATAGT
TTTAAATGTAATGATATAATCACAAAGTACTTGTCAATATTTATTGAGAACATTGTTACA
TATTTATTTAGGTAAGTATCGCTCAAAATGTGTATGTAAAATTGTAAAGTTATTTATTGA
TAAACTGTTTTAGTGAGATTGTAGTGATTCTAGATGTGAAAGTGTACGGCAAGCTGGAAG
GACAGTCGTTACTGCCAGACTATAAGCGTTCGTTAAATTGATGTTTAAACACCAAAAACA
TGTTTTCCATAATAGTGAAACCATAGCGTAATGTTTGCATTTTCAAAACCTCCATTTATT
TGTCAGTTTAGGAAAGTTACGGTTAAAATTGTACAGTCAACGTCCGGTTGTATGACTCGG
AGGCTCGAGCCACCGTCCCGCCTGTTTGCAGCGAGACTTCAACCTCTCGGTAGTGTGTTG
AGGAGCAGCTAGCGGCGTGCAGTGCCGATGCAGTGCCGACGCCGCGCCGACGCAGAGCGG
GTGCCGCGCGAGTGCAGTGCGCAGGTTGTATTGTAAAGCTAGGTGTAGGACGTCGCGAGG
ACAAGTGGTTGAAGTGCGCGATCTCTCGTATATTCCGTGCGTGATGTTGATAGTTTTCAC
TTTTGTAAAAAGTCGTATCGTGAGAACAGATGAAATGTGGTAAATAATAATTTAAAGAAT
ATCTGTACAGTTCTATTTGTATAGAAATAATAAATAACGATTTAAAAA
(4248 bp)

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