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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaMG_comp25960_c1_seq1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_HEAT_repeat-containing_protein_1_isoform_X2_[Bombyx_mori]
Ontology
GO:0000462 P maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005739 C mitochondrion
GO:0006364 P rRNA processing
GO:0016020 C membrane
GO:0030515 F snoRNA binding
GO:0030529 C ribonucleoprotein complex
GO:0030686 C 90S preribosome
GO:0032040 C small-subunit processome
GO:0034455 C t-UTP complex
GO:0042254 P ribosome biogenesis
GO:0044822 F RNA binding
GO:0045943 P positive regulation of transcription by RNA polymerase I
Transcript
Level		FPKM:3.94 TPM:3.32
ORF EntryO_TrvaMG10842_5prime_partial:A_TrvaMG_comp25960_c1_seq1
Sequence
(Nucleotide)
AAAAAACATAATGTATTGAATATTTATTGGCTTAAAAATATTTCTCTAGCGGTTCTCCTA
ATATTTGTTCGAGCTTCCTAATCGCGTCTTTAGTGCATGTTTCTATTCTCTGGTCGCCGT
CTTCCAATAATTCTGCTAAAAATGGCACGCTTTCTGCTAACAATGGTAACCAGCTGCTTC
CCAGTTGAGTCGCCATTGCTACTAAACAATCTAGCGCTGTTAATCTTATTTCCGCATCGT
TATGCCTGGTCTTCAACAAAACTTGATAGTTCAACAGTTTCCACAACGAGTCATCGGCAG
TAGCTACTGCAAACTGCGATATGCACGGGATTATGTGCTTTATCGCTCTTGTTTTAAGAC
TCGAAATCCCACCCACAGTGTTCTCCAATTGATCCACCACCGGCTGCATTAAGGTTTCAA
ATCGACTTTTATTTACAAATTGTTGACTGTCGTATAGAAATACTATGTATAATGTTTTTA
TAATGTATTCTACTAATATTTGACATTTATCATCGTTTTCGAAGTAAAGGTGCTCAGTTT
TGCAGTTGTTGCAATTGTCGAGAAGGTCTGCTGCGTTCTTTATGAAGTGGCCGGAGAATA
ACACGAATAGTCCCTTTAGTTTTTCGGCTATGGCGCTGCTTAGTCTGTAGAAAGTTATTG
TTCGATCCTTTTGTCCTTCAACATTGGTTCGGATAGCCCAGTCGTAGATCTTGAAGTATA
ACGGCCTAAAGCTAGATTCCGACAGCTTAAGAACGAGAGAAACCAACGCGTTCACTACTT
CGTCTTCCGCCTTATCTATGATGTCACTGTCAACATTCTTCTCAACGGCATCACTTCGCA
ACTGAAGTGCAGTTAAGAAGAATGACGTTAAATCTTGTTGCAATGCAGTAAAGTCGGCAG
GTGTGACGTTGGCGAAGCTGTCAGCTAATACGGACATCACAGGACCGATCGCATCAAACT
TTTCTTTTTCCAGAAGCAACTGATGGGTTTCGCTGACAACTGGGATCAAAACTCGCGGAG
GAATGGACTCTGCTATCTTCTTCCTAATGTTAGACAGTTTGTTCACTATTCCGGACACTT
TGACGCATTCCTGATCCGCTGCTTGCCATTTAGCCAGCATTATCGAGTATTCGTACAGAA
TTTTCTGGAGATACGGACTTAAGAACAATGGTACACTCTCGACAATTTTCGCTATGGCCG
TCACAGTACTGAGTAGAATAAGTTCGGGTGTTTCGGCTTTTCGTTGTTTCTTCAGTACTT
TGATTAAGGCAGGCATGAATTTACGAAGGCTGACTAAAGAATGCGCTTTCAGGTTGCTGC
ACAATTCGGCCAAACATAGAACAATCGAAGCCATTACGTTTCCAGAAATGTTTTGGTTGC
AAGTATACTCTGTAACTACTTCGAGAACTGATTTGAAAGGTTCTGGGTCTTCTGCTGCCA
ACATCCTCGTCATTAGTTTCAAAGAAAGTAGGGCAGTTTGCTGACTCAGTTCTAATTCTT
GTGCGGCATTTTCAGTTAAGGTATCGTCTTTTTTGTCAACAGATTTTACGGCTTCCAGTA
ACTCTGGTAGCAGTGAATGTAACAACTCTCTGTCCACATCAGCAAATATTTCTGGCGTAT
TTTGTATCTTCGTGTTCAATAATTCCATAGATTTCCTTCGTACCGTCTGCAAAGGGTACT
TCAATAGACCTTTGACAACACCCAAGAACATTTGAGAAGATAACAAATTGTTTGTGTGGT
CTAGTAAGTCGTAACTATGGTGCAACATAACTCGCCAATACTTAGCCGTTTTCTCGTCAG
ATACTTTAGAAATTGATTGTATGAAAGTTAAAATGTTTACAATGATGGTCTTATAATGGG
TCTCCATTTCTTTAGGTTTCGTAGCTTGACTACAATGATGGATAAACCGTGAAGAAGCCA
AACAAGTATTCATGAAAGTGATAATGACATATTTGAAATGACGCAGTTGGACTGACGTGT
GGCCATTCACGCTGAATATTTCACTAGGATCGATTTCAGTGTCCATTGATTCCTCGTCCT
TTTGTAAGGGCAATGATTTTATATATAGGATCAGTTTTATAAAGTTATCCAAACATACTT
CTGGAGGGAACTCGAGCACTACACTCTGCCCGAAATCAAGTCTGTTGAGTGGCTGTTCTC
GATCAGCCAAAGTTCTTGATTGCCTCTTGTCTTTCTTTTTAGATTCATTGAAATTGACGA
TGTGTGTTTCTAACAGCAGAGCCAGGAACACCCAAAGAAATTGACTTGGCCCAAGAGTGT
CTAAAAGTTTTTTGAAGAGGGGCAATCTTCTATGTTCGGGAACATCTAAAACGACGCTAG
CAAAAATACGAAGCACGGGCACAACTCTTTTCTGCAATTGCTGAAGCTCTTTCTCCGTGT
GGTCTTCTATGCTTTTGTCAAGTTTCACTAGAATAGGAATTAAACTCTCTATGATCTTTG
TGATTATCTGGAAGCTGTAAGCATCATCATGTCTAAGAACTGACGATCCTATGAAAGTGA
AGATATCCATTGAGCGGTTGAGTACCTGTTCAGGTAACATATATGCAGCGTGAGACATTA
ACATAAGGGCGTGGTGGTGAGTTTGAGGGTTCTGCGTTCCCCTAATACATTGAACAACTA
AATCGACGTCGAAAACATTCTTCAAAGATTTCAACTCATCCGCGTCCTTATCGTTGACGT
ATTTTTTACAATAATACCACAAAGATGAGAGGATTAGTTGTTTTGTGTATTCTACGTAAG
ATTGTTCTTCGAATCTCAAACATTTTTTTAAGACTTGGAACAGTATTGATACGAAAGTGA
TATCCAAGTTCATTTTCTTTTTGGATTGGACATATTCGAGAAGAGCAACGCCCAGTTTCC
ATTCGTCAGTTTCCGCCAACTGGTATGAAAACATGGACATTGTGTGTGTCTTCTTTTTCT
GCGAGACATCGGCTGGGTCAACCGCACTCAGCATTCCGTTTAAAATTGGCTTGAAATCCT
CAAAACTCAGCTGCACCCTCTTCATTACTTTCGAAGCTACACTTGAAATCTTAGGGTTGT
TGCTAACAGCTCCAGCGGAACTTATAAGATGGACCAATTGTTTTCGTTTTTCACCAGGAA
CTTTTGCGAATACTTCTTCAGTCAGCCGTCTCATGATGAGAACAGCGGGACAGATAAATG
ACTGGTCTTCGAAGATACATTCTCTGTATTCTTTCAATGACAATTCAATGTGATCCCATA
CTTGGTCGTTGGAAAAAGTTGTGACTGTCGATTCGTTGATGAGAGAAAATACAGTTCTAA
ATATGTTTGATTCGTAAACATCGAAGGTCAATTTCTTGTCTTCTTTGTTTTTTAAACGTT
TCGTAAATGGACTCAAACAAGGTGTTATCAAAGGGAACGTAGAAGCATTGTCGAGTTGAC
TAATAATTTTCAGGAAAGCTGATTTGATGTAACTTGGAGTCTTCTCATTTAGCAAACCCG
TCAGCCGCAGCAAACAGTTGCGTCTGAACAATTTCTTATGTTGATCCTTTTGAGTGAAAA
TAGTTTTCAAAACTTGCGATATCTGATTGGGATCTAACAAAAGCTCACTTTGATGGGCCA
AGAGCTCTTGTAGTAACTGCACGTATAGCAATTTTTTGTCTGGTTCATCTCGAAGCAACT
TTTCAGTGAAATTTGCAATGCAATGTCGAATCGCAGCAATAGGATTGTTGAAATTAAACA
GTATAACCAAAATAACTACGTCTGAGTCATACAACCAATTTGCGCCATTTTGTGCCACGA
GAAAGTTGGTCAGTAATTTGATGCTTCTTATTTGTAGTTCTGGAGAAATGACGTCTTTAG
GATCAGTAGCGTAAAGAATATGACCACATGCAAAATTGGCAATAAAGTTGAACTTGTCTT
GAGGGGAACTGAAGAATTTATTCAACAATTTCTGTAACAGTTCTACGTAGTTCTCTCCAT
ATCCGGGAATAGCGCATCCAGTAACGCAAATCTCATATAATCGTCTCACCAGAATCATAT
CTGTCGTTCTTAGCATATTGCACCAAGGCTTCGCTACATCTTTGATATTCACATCCTCTA
TCACTTTACCGAATATATACTTTAATACTTCGAACAGCATTTTGTTTTCTTTAGCTTTCA
CAATGAATTCAGGCATGATTTGCGCCGAGAAAGGCACCTCATCAGTACTGTGAACTATCG
ACCTACACTCCACAGATTCGAGAAGAAGATTTAACAAATCGGAAATCTCTTCAACCTCCT
GTTTCTTAAAAGTACAAGTTTTGAGGAGCATATAAAAACATATATTAAGAGTGTTAGTTT
TGTCCAAATTGTGCTCATCAAGTATATCTCCTAAATCTACTTTGTTATCTACGAAGAAAA
CTTGGAATAGTTCTTTGTTCAATTTATTGTGATTGGAAATATTGCTAATTTTTTTCAAAG
CTTTATTTGTTGACGCAAATTTTTGCCCCCAACGCGACTTTAGTATTTGTGTACTAATTT
CAAGTTCTTTCTCGTCTTGAGGAAAGAGAAGGGGTAATATCGCCAACACAGTATCTTGAT
TGATAGGCAACAAATCTAACGCGCAGAATTTTACTACAGCCTTCTTTATAGCTTTAGTTC
CTTTCTTTGACTTTCTAGACACGATCTTTACGAAGGCATCAGAAATATCGTCTTCACTGA
GAACTTCAGCTAAACTCTCACTGGAAATGTTCAAAGCTGCGATTACTACATCAATGTTGT
CATCGCTAAGTCTTTGGAGGATCGATTCTTTGACGAAATCTGGATTCTGCAGTTTCAAAG
CACCGAATTCTTTTCCGATATACTTTACGGCATCGATACGTAAACTTGGGTTGGTGTGAT
TCAAGTTCTCGAAAAGGTATGTGTCACCGACTTTGTGGGCGATAGAGGGTTTGAAACAGA
GCAGTTTTG
(4929 bp)

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