SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaMG_comp25923_c0_seq1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_striatin-3_isoform_X1_[Papilio_xuthus]
Ontology
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000159 C protein phosphatase type 2A complex
GO:0003700 F DNA-binding transcription factor activity
GO:0005516 F calmodulin binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0016020 C membrane
GO:0030425 C dendrite
GO:0032355 P response to estradiol
GO:0032403 F protein-containing complex binding
GO:0033147 P negative regulation of intracellular estrogen receptor signaling pathway
GO:0043025 C neuronal cell body
GO:0043234 C protein-containing complex
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0051721 F protein phosphatase 2A binding
GO:0070016 F armadillo repeat domain binding
Transcript
Level		FPKM:16.56 TPM:13.94
ORF EntryO_TrvaMG10756_3prime_partial:A_TrvaMG_comp25923_c0_seq1
Sequence
(Nucleotide)
ATAATGGCAACATTTTGAAAAGCAATGTAGCGAAGTGCGAGCGGACGTCGATTCGACTTT
TCTTTCCGTCATGCAATAATTTTGTCATTCATGAATTCGTCGATAAAATTTCTTTTAAAT
GGTGGCACATCTGTGGACGTTATTTAAGAATTAGTATTTAATCATGTGTTAGCATTTCGT
TTTATATTATTCTCGGTCTTAGTTTATTAGGAGTGTGACAAGTAAAGTTCGGTAATGGTG
GCCATGTCATGAAAATCCCTACAGCCATGGATGATAACTCCGTATCTCATCACAACGGAG
CGCAAGTGGGATCTCAAATTGGAGTCAGTGTAAATAATAAACAAAATGAAGAACCTAGTC
AAAGTGTGCAGTATTCAATACCGGGCATTTTGCATTTTATTCAACACGAATGGGCAAGAT
TCGAATTGGAGAGATCACAATGGGAGGTGGACAAAGCTGAATTTGAGGCACGGATTGCCT
TCCTTCAAGGCGAGAGGAAGGGTCAAGAAAATCTCAAGAATGACCTCGTTAGGCGGATTA
AAATGCTTGAATATGCATTGAAACAAGAAAGAGCGAAATTCCACAAGCTCAAGTACGGTG
TGGAGTTGCAACAAGGCGATGTGAGACCACCGCCAGAAGAGTCATCAACTGAGCCTGAAC
CTTCGGAACGCGCGCAATGGAAGCAGGGCAGACAATTTATTAAACAGTACTTGCAGGAAA
TAGGCTATACGGATACAATTTTGGATGTGCGTTCAAATAGAGTTCGTGCACTTTTGGGTC
TGAACAATGAGGAAGCAGAGAACTCTAACTACAGAAACTATGATAAACAACAACATGACA
GATGTGATTATTCCAATAACCATATGGTTCGCAAATATGATTATGTTAAAGAGCCACGTA
AAACGAGCGGGTCATCTGGAGGTGGTTACAATGACGAAGGCATGTCCGTTCAGGAGACAG
CTGCAGTGTTTGCTAACTTTGAATTCTTGACCAATCAAGAAATGGACATGGACGAAATTG
ACGATCTTGATGCCAAACAATCACTTCATGCTTCTGGGAAACAGGGCGAGGAGGTGGATC
ATGAAGCAGAAGAAGTTTTAAATGAACTCAACATGCTCACTATAAACGAAGTTGTGAGTG
CAGGACAAGGAGACGAGTATCAGGCTGGTGCGAGCGGTGCGAGTGCGTCTCCGGGCAGCA
GCTCGAGCGGCGGCGGCGAGGCGGACGAGGAGACGCTCGGTCTGGGCGAGCTCGCTCAGC
TCACCGTCAGCAACGAACCGGAGGCCTACGACGTCGCCGGGGCCAACAAGGAATCCTTCC
GCAAAACATGGAATGCCAAATATACTTTACGATCGCATTTCGATGGGGTGCGCGCGATCG
CATTCCACCCCACCGAGGCAGCGCTCGTGACAGCGTCCGAAGACCACACATTGAAACTGT
GGAACCTACAACGCACTGTACCGGCCAAGCGCTCCGCCGGACTCGACGTGGAGCCTCTCT
ACACGTTCCGCGCTCACACGGCGCCCGTGCTCTGCCTCGCCATGGGGGCGCCGCGCTCTG
AGGAGTGCTTCTCCGGAGGGCTCGACGGAACCATCCGCGTGTGGAACCTGCCGCCTCCCA
CTGCCGACCCCTACGATCCCTACGACCCTACTGTCCAGGGCGCGGTATTGCGAGAGCACA
CGGACGCGGTGTGGTCGCTGGCGAGCGCGTGCGGGCGGCTGGCGTCTGCGTCGGCGGACG
GCACGGTGCGGCTGTGGGCGCCGCGAGCCCCGCG
(1774 bp)

- SilkBase 1999-2023 -