SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaMG_comp25874_c0_seq1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_nesprin-1-like_[Bombyx_mori]
Ontology
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005521 F lamin binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005640 C nuclear outer membrane
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005856 C cytoskeleton
GO:0006997 P nucleus organization
GO:0007030 P Golgi organization
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030017 C sarcomere
GO:0031965 C nuclear membrane
GO:0034993 C meiotic nuclear membrane microtubule tethering complex
GO:0040023 P nuclear migration
GO:0042692 P muscle cell differentiation
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0044822 F RNA binding
GO:0045211 C postsynaptic membrane
GO:0051015 F actin filament binding
GO:0090286 P obsolete cytoskeletal anchoring at nuclear membrane
GO:0090292 P nuclear matrix anchoring at nuclear membrane
Transcript
Level		FPKM:6.36 TPM:5.35
ORF EntryO_TrvaMG10535_3prime_partial:A_TrvaMG_comp25874_c0_seq1
Sequence
(Nucleotide)
GCCGCCGCCAGCTGCCGCGCGCTCGCCTCCACGCCCGCCGGGCCCACGGACTGCGCCGCC
ACGCCCTCCGGACCGAAGTGGACGTTCAGCTTTTCAACAGCGTATGATATTTTTGTCTTC
TGAGTGGAAATGTCATTAATGATTTTTTCTCTGAGTGCTAATCTATCACGGAGTGGTTTC
TTGGCATTCTGAGGAGCCTCCAGAGTCCTGGACGTGGCTTCCAGCCAGTGTCCGACGTCC
TTCAGTTTCCTCTCGCACCGTTCCCACTCCTCCGCTAATTCTTGCAATAATCCGTTCGTC
TTCGCTAATTTCTTCTCGACATCTACGGTAGCGTTCTCCGCGGCTTCGAGTCGAGACGGT
AAGTCTCCGGGACTCGTGACGCGTTCGATTGCCTCTATTTCTTTCGCCATATCTGCTAAA
TTTTTCGCTTGTTGTTTACAACTCTTGAGCGCGTTCCCATATTCAGTCTGTTTCTGTAGC
GTCTCCTGCAAGTCGGCCAATGGGAGCGGCCGCGCAAGGAAAGCACGTTGTGTTTCGACC
CAGAGGAGCACTTTCTCCAACAAGGCTAGGAACCTAGCTACTGCATCACATGCATCTTCG
ACTGCCGCCTGTCGGGCCTCGAGCTCGCTGCACACGGCCGCGAACTGATCGGAGAGCGCC
GTGACCGTGGACTGCACCAGCTGCCTCTCGCTGGGGTCGCGGCTGCCCTCCACGATGGCG
CGAGCGTTGCGTGCCAGGCGCTCGACGCGGTCGGCGATGTTGGGCACCTCGGCCCGCGCG
GCGACCAGGCGCTCCCGGTAGGGCTCGGGCGGCAGCGTGCGGTCCCGCGCCGTCAGCTCG
GCGGCTCGGATCCACGTCTGCACGTCCTCCACGTCCGTCAGGTACTCGGTGCGCGTGTTG
CGAGCTCGCTTCCATTCCCTCTCCTTCTCTTCCATCGCTGCGGCGAGAGCTTCAGACGCT
AATTCCAAAGCGGACAGATCCTGGGCGACGTCTGCCGGGGCAGAGCCGCCGTAACGTTTC
CTGCTCTCCTCCGTGAAGGTCTTGGTTCGCTGCACTAGCTCCGAGACCTCGGCCGTCAGA
GAGTTAACGTTGTCCTCTTCGTCTTCGCCGAATACGTATAAAGTTCTGACTTTAGCGATG
CAGACTTCGATCTGTTGTCGGAGCTCGTCGATCCTCTCGGACACGCGGTCGAATTCAGAA
ACAATATCTTCAATCTCCGCGAGCCGCGCCGCTAGAGTTTGTCGCAATCTCTCATAAGCA
TCGACGAGATCCTTGACGTTCTTCTCTGCTTCATTAGCCGCGTCCTTCGAGTGACCTCTG
AGGAGGGACACCACGAAGTCAGCGTGTTCGAGGAGTTCATCACGACTCTCCTCTAGACTC
GACACGTCTGATTGTAGCTCCTGTAAAGCATGTCTGGTGTCCAAAGCCCGCCTCCTGGTG
CTCGGGTTCGTGTCCAGTTGTTTGAGACGATCGGAAGCAGCGGTAATAGCGGCTCCAAGG
CTCCTCTGCACGTCCAGGAGTTGGCTCCAACGTTGGAGCTGTTGGTCAGCCGTTGCCGCG
CGCTTGGCCAAGCCTTCACAAGCGATGTTCCAAGTGTCAGCTAGCTCCCTGGTCCTCTGC
TCGACTCTCTCCCCGCTGGCTGCGTCAGCTCCAGAGCAGAGTTCCCGAGCTCGCTCCCGG
ATCACGTCCAGGAGCGGCTGCTGATTCTCTAGGTCGTTTTTAGCGTGATTCAGCTTCTCG
AGGTGGAGTCTGAGCGCGTCAACCGTAGTAATGGGTTCATCCTTGATGTTGTTCTTCTCC
AAAATCGCCTTAATCTTCTCCATGAGTTGGCAAAAGTCTTTCCAAATATCCAGGTCTTGT
TCCAACTGTGCTTGGCGAGATTTGGCCGAGTTCAAAGTGTTTTTCAGAAGCTGGTTGTGT
TTCTGGTGGTCTTTGGACAGCTCTTCTTGTTCTGAAGCCGCTAGAGATGCCCAGATCTTG
TCAACTATGTCCTGCATACGCTTTCCGACCAAATCCTTCATCTCTGGCTCGGAGGAGTGG
AAGAATGATTTATGCTCTTCCAGATCAGCTTCAATGTTCTCGAAGTCCGTTCCATTCTTG
CCCATGTTCAGGCGAATGTTGGCTTCGTTCACCCAGATGTTCAATTTTTCTACCAATTGC
AAGTATTGTTGTCTGTACTTCTTGTTGTCTTGCAAGTATTTCTCGCGGTTGGCGAGTTCA
GCAGGTAGCGATGTCTTTAAAGAATTACCGTCGGATATCATTTCGAGTAAGGCACCAGGT
ATTCCGTCATCGTTCTTGACAGAATCAGCGATTTTAGTGAACTTGTCTAGATTGGATTGT
ATGTTCTTGACAAGAGTGGCGTGTTCTATCAGTTTTTTGTCAACGCTCGCCACATCTCTG
TTCAGAAGTGGACGAGAATGTACAGCTGATTCATTATCATGGAGCGATTGTAGGATTTCA
GACAAATCTGAAGCCAATTTCTTGTGTTCTGCAGCTGCCCTCTCATGCTCTTGTCTCTTT
GATTCAACAGTCCTCCTCAAAGTCAATAGTTGCTGTTTAAGGGACTGAAGAAGCTCAGTG
ATGTTGTTTCTATCGATGACAGTACCTTCAGCAGCTATTTGCTGACCCTTATCTGTAGCC
GTAGCTAGCAAAGCTTCACAACCTTGGATTTTAACAATGATGTCATCGTAGCGTTTGATC
TTGTCCTCGAGAGAGTCATTAGACTTTTCGATATCTGAAGTAAGATCGGTGTATTTAGAG
ATAAACTCTTCGATTTCCTTGATGAGAGCAAAGAATTGTTCCCGCAATAACATGAGCTGT
TTGAGTCTCGATATTTGATCTTCAATTGTGCTCACTAGTTCATCTTGTTTGGTAAGAATG
TCTTGTAAATCGTGAAGGTTACCGCCTTGTAACTCATTCAGCATTGATTTGTTCTTCTTA
AGGTCTGCCAAGATGGATTCGTAAGCCTGTATGATTGGCAGTACATCTTCGACCTTGCTT
CCGATAGGTTTGTTCAAAGCCTTGAGTTTGTTTTGGATTTCATTCAAGAACTCCAAAGCC
GCAGCGATCTTGGCAGCAGCGTCCTTGTACTCCTTGATGTGTTTAAGAAGGATATTCTTC
TTGTCGTTGATGATGGCGTTGATTCTCGCAAACTTGTCCGAGAGTACATTGACTTGTTCT
TTTAGCTGCAACTTGTTTGAATCAGAAAGAGACTCGGCGATGTCTTTAGATTTATCTTTG
ATCTTGTTTATAACTTTCTCGATGTCTTCAGCTTCTTTGCTAAGTTTTTCGAATTTGGCC
AGTTGTTCTTCCAGAAGTTGTAAGTTCGATGTTCTTAATTCGGGCGTAGCAGCAACCTCT
GCTTCGTTCAACCAGCGCTGGCATTTAGCGACTTCAGATTCAAACTCATTCCTTCCTTGG
AGCAGTTTGGTTAACGCTCCAAGCTTGTCGTCGATATCTACTTTAGCTGAAGTGTAGGAC
TTGTTCAGGTCTTCTAAGATGGCTTGTAGTTTAGCGCGGTCTTCGGGCGAACAATCTTTG
GAGACAGCGTTGCCTTGTCTCATGACTTCAGCTAAAGTTTCGTTGTGGAAGTCAGATAGT
TCGCTCTGGTGTTTCTTTGAACAGCTATTTCTTTCTCGACTTTAGCTGCTTCAAGTGGAA
CTGGTCCACCAAGCTTCTTAATTTCAGCGAGTTTGGACTTCAGCCAGTTCTTAGCCTTTT
CGATGTCGTTCTCAAGTTTCTTCCTGTCTTCACCACATGTTCCTAATCTTTCGATTTCTT
GTTTGATTAGGGTCGCAAGTTGTTTTTGTTTTGAAGATAGCTCCGATAGTTCAGATTCTA
ATTGCATCTGTTCTGAAGGTTCTAGTTCAGCCTGGATGTTGCTGACCTTCTTCTCCAGAG
AGTCGATGACAGTTTTCTTGCCATCAGTCTCTTTAAGAAGATTGGCTATCTTCTTTTGTC
TTTCTTTGACAGATTTACTTTCGTAACCTAAAGGTTCTGGGTGAAGGAGGTTATCAATTT
CCTTCTGGAGCCATTCGTTTTGGGCAGCGACTTCTTTCTTGGTACCGTCGATGGCTTTGT
GTGTTATTTCTAGCATTTGAAGTTTACGTTGGATGCGTTTGGCGATGTCGTTGTAGCGAC
GTTCTACTGACTTCATCTGTTCTTCAACTTGTTGTGATTCAAGATTGCTGACGATATTGA
TGACAAGGGTACCAACAGCTTTAATATTGTCCACCTTCTCTTTCCCAGCTTGTCCAAACT
CTGCAGACAGCTCATTAAGAGCAACTAATTTCTGTGGGCAAGGTAGACCAGACCCTTTGT
CAGCTAAGCACATCTTCTTCAGAACTGCATCAAACCAGTCGTGAATTTCTTGACATTTGT
GACGGAAATCATCGATGGTGCCTTGGTTCGCCTTTTCACGTTCAATGGCTTTAGCTATTG
CTTCTTCTAGATTATCTAATTCCTCTTCTAAATTGATTTCGTCTTCCAGACCTTCAGTAG
GAATTTCTGTCAGCAGTCTGTTTCTCTTTTCGCCCAGAGAGACTAAGGCATCGCTCATGG
CTGCCATGTCTTGTTTGGCAGCTTCGGGTCTCAGCTTCGAGGGATTGGCAAGCCAGTCAC
GTGCCAGAGCGTTGTGAACGTTTATCCATTCTTGGATCTCTAAGACCTGCTTCATAGCTT
CCTCCATACCATGGACAGCATCTCCAAGGGTTTCCAAATGGCTTTGGACCTGATCGATGA
GGTCTTCCAAACGGGCCCTGACATGGAGTTCCCGCGGGGGGATAGGGAGG
(4790 bp)

- SilkBase 1999-2023 -