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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaMG_comp25857_c0_seq3
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_heterogeneous_nuclear_ribonucleoprotein_R_isoform_X3_[Amyelois_transitella]
Ontology
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0006397 P mRNA processing
GO:0007623 P circadian rhythm
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0030529 C ribonucleoprotein complex
GO:0043025 C neuronal cell body
GO:0043231 C intracellular membrane-bounded organelle
GO:0045727 P positive regulation of translation
GO:0048027 F mRNA 5'-UTR binding
GO:0070937 C CRD-mediated mRNA stability complex
GO:0071204 C histone pre-mRNA 3'end processing complex
GO:0090367 P negative regulation of mRNA modification
GO:1990635 C proximal dendrite
Transcript
Level		FPKM:2.83 TPM:2.39
ORF EntryO_TrvaMG10472_complete:A_TrvaMG_comp25857_c0_seq3
Sequence
(Nucleotide)
GGCGGCGGCGCACTGCGACACTAGCTGGCGGCCGCCGGCGGGCCCCACTCGCACGCCGCC
GCCGCGCCCAGCCGCCGCTTCGACTCTCCCCCTTGGTTCTCGTGACCCCCGTCGTGCTTG
CGTTTACCTGGTAAACTTGGGTTGGCGCGCGGGTTGCCAGGCGTGGCGCTGGGCGTGCGC
CGGCCACGAGCGGCGCGGCGAGCACCACCACGGGCCCCAGCCGCGGCCCCGCGACGCGCC
CACCGACCGCCCGTCCCACATGACCCACCCGTAATCGGGTCTCGAGTGTTGCGGGCGCGG
CGCCTGCTGCGGCGTGCGACCGCGGCCCGCGTGCGGCGGGGAACATCCGCACCAGTCGAA
CCCGGAGCGGCCGTGTATCATCTGCATCATGCGCCGTTCGCGAGCTCGCAGGATCTCCTC
CTTCTTCTTCTTGTCGGAGGGAGGCTTGGCGAGCGACACCTCGAGGCGCGACCCGCCCAG
GTCCTTGCCGTCCAGTTCTTGCATCGCCTTAACCGCAGCATCCCTGTCGTCGAAGTGCAC
AAACGCGTAGTCCTTGATCTTCTTGACTCGTTCCACGTTCCCGAAGTGCTCGAACTCCTC
CTTCAGCGCCTCCTCCGTGATGTCTTGAGTTAGGTTCCGCACGTACAGCACCTTCACTTT
GCTCATAGTTTGCTCGTCGGGTTCTTCTTGAGGGTCAGCCCAGTCGACTATAATATCACA
GCCCCAAACCTTTATTCTTCCGGTGCCGAGTCTGCGTTTGGCCAGCGACGCAGCTTTATG
AGACTCGTATTCCAAAAAACAAAATCCTCTATTTTTCTTCTTGTCATCGGGCGAACTATA
TATAATGACTTCAACCAGTCCAGCTGTTAATTTACCAAACTCTTCCAGTATCTCCTCTTT
GCCTTTAGACTTGGGAATGTTGCCGACGAAAAGTCGCAGATTCGGTACGCTAATCTTAAT
TCTCAGAGTCTTCCCTGGTTTTATTTCGTGATTATCGAGCTGTGGGAAAAATAACAAGGG
AACAATTTTGAAAAATGTGATTCGGATCCGGTCGAGCCGTGTCGTACTGTCGCGCACTGT
ACGCCGGGTACGTAGCGTCACTAGCGCCGCGACAACAGCCGCTCCGGGAGATGACGGTTA
GAGCCAATCGTGATGTGTTAACTGAACTTTGGATGACAAGCCGAAAGTGTGGACTGAGCA
AAGAGGAGAGCCTGATATTTATTCTCGTTTTGAGAACTTTACGAAGCCAATTCAAAGTTA
ACCCTGTAAGTGGACCGTTTGATGAAGTGAAAATAAAAAGAAGCGAGTACTAGAGTGATG
GTGACATACAGTAAATAAAATGAAAGCAACTTAAATTGAACGAGGTGCAACATTACATTA
TGGGATCATGTCTTAGGAGAAGCGAGGCTACTCAGTATAGGTGTTACGGTTGCACATTTA
GACAATATGTGATTATTGCAGCAAGGATGCCATTCACATACAACACTATTTGAATCATTT
GAAGTGGACAAGTTTCAAGCGTTGTGTATGTGAATGACGACCTTTGGGAGGATTATTAAT
AACATGCTATATAATGAGACAAGCTTAAATATAAACATCCCAAGTGATTGAGAATATATG
AACAGGCAATGCTTGCCAAAGTGCTGGTTTATGGGACGAGTACTTTGACAAGCGACGTTC
GCGCGTGGCGGTTATAAAACTTAATTTGAAAATGGAATAAAAAGACCGCCACACGCGAAA
CGCGGTGCATTAATACTGTTAATAAAGGAATGTCATTAACATTGCGACGAGAAACCTGCA
AAGTAGACGTTCAATTAGAAAATTTTGCATCAGATTCACACACCAATTATAAAAGTGAGA
ACATCATGTGACACTTATCGGTAGGGTTGCCAACTTTGAAATCAAATTGTAGTACAGTTA
TATATTCTTACGATTGAAAAAAAAAGATTAAATAACGTTATATACGATTATTTTTACATC
TCTAGAATAGTAGCTATATGTATTAAATTTAACCACCCACCCATAAATTACATTCATTGC
AAGATTTTCGATATTATAACACAAAAAAAACTGAAGTTATTATAATTTAAAGATTGCAAA
AGAAAATCTTAGTCTCATTTTTTAGGCCACAAAGATAAGTACAGTTGGCAACCCTATTTA
TCGGTGATCGTTCGAGTTTTCGACACAATTTAGTTGTTACCAATCGTGCTAGTGACTCCT
TTGTTTTACACGATAACAAATATAGATAAGACGGGAGGACATGGCGCGCGAACGCGACCG
CCACAACACTCGTCCTGTGCCTCGGTACACCGGAGTTTAGTGCTCATGCACTCTGATTGC
TCCAGAATGTGACAAAACACAAGGCTAAATTTAAAAGCTACACTTTATATAATACATTAG
GACGTAAGAAACATCTCGTATAATCGAGTTGACAATTAGAATTGTAATGTTGTATGTTGT
CACTTTCAGAGAGCCTCCTTAAGACTAAAAAAATGTGTCTACGTTTTTTTGTTTTACATA
TTGTATTGAGAATTGTAAAATTTTATTGTGTATTTCAAAATCTCTGCGTGTCCTTGTTTC
AGTATCCATATAAGAAAATTATTGAAAGTAACTGTCAGTGTCTGTGTTCTTATTTGCCTT
TGTACCAGTGCAACTGTAGGTATCTTGTGTGTACGTGTACATGTGTCTGTGGGTGTGTGT
GTGTGCGTGTAGGTACATGTGTTGGATGACTAACCTCGTGCACGGCGCGCTGCGTGGCGT
CGCGCGTGGTGAAGGTGACGAAGGCGTACCCGCGGTTGGCGCCCGTCATGGGGTCCATCA
TGAGGCGCAGGTCCCAGATGGTCCCGCAGCGCTCGAACAGCGGGATGAGCTCGTCCTCGT
ACATGTCCTTGGGGATCTTGCCGCAGAACACCTCGCAGCCGGCGCCCGGGGTGCCCCCCT
CCCACCCGGGCGGCGGACCCCCGTACTTACGTTGACCTGTAGTAACATCTAATGTATACC
CAGTCCGGGCTAAAATTTGCTTTATTTTTTCCTCATCTGGACCCTTGACCGGCACAGTGG
GCGTCAACGCGGGAGCACCAGGCACGCCCGCTCGACTTTTCTGTCTATAGGTTTTCATAA
CTCCACATAAAAAAGCACTTTTATTGGATACATGTTCGAGATTAGAATCTAAAAATTGTC
CAAGAACACTTAAAGCACCGTCGGATGGAAATTCTTTTAAGGCATCTAACGCACGCTCGT
CCAACTCTGCGTGCGCTAGCTTTCCAGTCTTATAAATGTCGTCGAGTTTGGCGGCTACCT
TAGGATCTAAGCCATATTCAAGGAGTTTGTGGTAATCTGCTGTCCGGCCAACATCAGAAT
CTTTTCCAGCTACCTCATCATAGGGTATTTCTCCATTGCCTTCCGCCATTCTATTAATTT
TGCTAGTTGTGGCCGAGACAGATATGGCGGCACCGCGGTCCGCGCGACGTCAACGTGACC
GCCAGTACCTACGGGGTTCTCATAACGAGGCGAATTCGCGGGATATGCAACGAGGAGTGC
ATTCAAACTTTTATGGCCACTTAAATTTGCAAAATAAAATTTGTTTTACGAATATAATTC
TAATGCCTCTGTAGTAAATCTAATGATAACCGCAATAAACGATATTGTAATTTTATTGCA
CAGAGATTTTTGCAATGGTTGCGAATAATTTTGAATGTGAAAGAGCGCGGCGCGTCGCGC
AAGGCTGCCGGCCGCGAGGTGAGACAGGCTAGCGGCAAGACGGCGGCGAGTGAGAAGCCG
AGAATGAAGGGGGGAGGGTGTTGCAACCACCGGTGCGAGGCGTGCAGCAG
(3830 bp)

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