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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaMG_comp25802_c0_seq14
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_E3_ubiquitin-protein_ligase_synoviolin_[Amyelois_transitella]
Ontology
GO:0000209 P protein polyubiquitination
GO:0000836 C Hrd1p ubiquitin ligase complex
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0018279 P protein N-linked glycosylation via asparagine
GO:0030433 P ubiquitin-dependent ERAD pathway
GO:0030968 P endoplasmic reticulum unfolded protein response
GO:0036513 C Derlin-1 retrotranslocation complex
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0044322 C endoplasmic reticulum quality control compartment
GO:0046872 F metal ion binding
GO:0051082 F unfolded protein binding
GO:0061630 F ubiquitin protein ligase activity
GO:1904264 F ubiquitin protein ligase activity
GO:1990381 F ubiquitin-specific protease binding
Transcript
Level		FPKM:10.35 TPM:8.71
ORF EntryO_TrvaMG10306_complete:A_TrvaMG_comp25802_c0_seq14
Sequence
(Nucleotide)
TTTTTTTTTGCCTTTATTACATTTTATTATTATTATTAACTACAAAAATAATTTATTATG
TTAAATTGATTTAATCATGTTTTAGTGAAATTTTAACAAATAAACTACTACAAATAGTAG
AAAAGACCAGTGACTCCGAAGTGACTCAATCCAAGTTTGTTGTAAATGATGTTGAGTGTT
CAACAATATTCAATAAAGAGGATGACCTGCTGCAGTTTCAAGATATATCAAACATTCTAG
TCACCAGCAACAAGCCCGTAAAACATGATGTTGAGAAGGACATACCTTTTGTTGAAATAC
CAAACTTGTATCCTGTGAAGCATACCATCACTATGCCACCTGAACATTTCTACAGTGATA
CCAGCAAATACCCTATCAAAAATAAAGTACAAGTTAAACATCCTCACACAACCTGGTTAC
ATTACAACAGACCTGAAGTGAGCAATATATATGAAACACCAGTCACGCAGAACCAAATAC
TAGGGCGATCTCTAACCCACGCATTCAATGTGGCTGCAGCTTACGCAAAGCAATTACATG
GGGAGGATGCAAAAGATCTACCAGAACCAGTATTTGTTAATTGTATTCAAACAGATGGCA
AATTATACCATTTTGGGGTATTGCAATTGAACACATTGAATGTTGATGGTAATGAAGGTA
CAAAAAATGTATGGTACTGCAAAAACAACATAAAACTGTATGACTCAAGCAGATACTTTG
GAGGAATGCCAGTTCTCGAAAACTATAACAACAAAGTTTATGGATATATCAATGCATTAT
ATAATAGTTAATTTAATTGTAAATAGACTGTAGCTTAATAAAAATAGTACATAGTTTTAA
TTTGATTTATTTTGGCAAAAGCATTGGTAGGGTTGGCAAGGAAAATATTGTATGTTGTAT
TTATGTATTCATTATATTTACATAACATAAATACGACTCCATTATCATAACCGATCAAGA
ATACACAATGCTTACACAATATCAAGACACTTTGTACATAAATAATATTATAATGAATAT
TCCCAAACACAAAATGATACAAAACATAACTCATTTATCCAAAGAAAACTTTTGCAGTCG
ACGTCTTCTCAACTCTGCAGTGTCATCGTCAGTCTTCACTCTATCGGAATCAGTAGTGTC
AGGCAAATCGTCAGATTTGATCTCAGGTTGGCTGGTCGAAGGAACTGGAGACGGAGATTT
AAACTGAGATGTACTCGGGACTGCATCAACCTCCGTTTTAACCTTCACTTCAGGTGCCAG
ATCAGTTTGCGTTTCGGTTTGTGTTGCCACAGTAACATTGTTCTGAGCAGTATTCGCGAT
GGCCGTGGAATATTGTTGCATAAGAAGCACAGAAGCGTCCAACATTGCCTGAGCCTCGCG
AAGTAACTGTAATCTAGCTTCAATGTTCCTTCGTTCGTTGCCTTCCATTCTCTGCAGCTC
GGCCGTGGTCAGCACGGCGAGGTTTGCAGGACGAGGCGGCGGTGGCGGCGGCCATGCCAT
TAGGGGTGGCGGCGGCGGCATGTTGGGGAATGGCGGCGGAGCGGGCGCGGCGGCGGGTGC
CGGTGCGGGCGCGGCGTCCGGCGTGCGCGGCGCTCCTCCCGCCTCCGGGGCGCGCAGCAC
GTTCAGACGACACGTGGGACACGTCTGTTGTCGCTGGAACCACAGCCGCAAACAGGCCGC
GTGGAATATGTGGTTGCACGGCAACTTCTTCGCACCTGAATGCATTTCCTCTCGGCAGAT
GATACATTCATTGTCGGCAGCTTCGAGCTCCGCCTGTGTAGCATCAGGATAGAGGGTGTT
CATATTACGAATCGCCCTTCGAGACAACACCACGTCATTGTATGCTTTCTTGAAACTCCT
CATAGCTTCATACATAGGTCGGAATGCAAACAGTGGTAATGTATAAATGCGGACCATAAC
TGCTACAAATCCAATATACAAGAGGACTTTCAGGAAGTTGATAGCAAGCTCCGTGTATAG
CAGAACTGCAGCTTTGCTCTCCCATGGCGCTTCCCATCGAGAGTCAATGGCATGAAGGAG
ATACTTTATGAGTATATTGGCTATCATAATGATGAGTATGCTGTACTCAAAACCAAACAC
AAGTTGAACTGAGGGTCCTTTTGATGTAGTGACGTGATATGCATGATGGATGAAGTAGAA
GTCAGCATGTGCTAACAACATCAACAAGCTTAGTATTCTTATATGGAACACCCATCCAAT
AACAGGACTTCTCTCCATATAGTCAACTCTGTCTTCGGCCAACCAGTGGAATGCTTTGAG
GAACAGTAACAGAGTAAAGAGTGCAATGAACTTTGGATTAAAATCATCCCTGAACACAGT
AAACGCTAAACACGTCTCCGTAATGGCATACCAAGACCTCTCTATTAAATGCTCAAATTC
AGCCGGGCGAAGTTGACCAAAGAATATTTTCCTTAGCATTTTCCCCACCAATAAAACTAA
TATAAACGCCTGCAGATACATGACTGCCATACTTGGGTTTGAATTTGTTAAATAAACTAT
CGAAGGATAAAATTGTTTCTTATGGTAATATGCATTGCCGATAACCACGGTGGTGAGTGC
GAGACTGATCACCGTTGCTAACACTGCCTTCATTTTGATAGTATTTTGGAACTCCTTCAA
AATAGAATCTTCATGAGATCTAATTTATTAATTTCTAAACACTCCAAATACATGGATTGT
TTCTAAAAACATTTTCAAAACATCATCTCTTAGCAATTCGAAAAAATATTTTGAGTTTTG
(2760 bp)

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