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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaMG_comp25802_c0_seq12
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_E3_ubiquitin-protein_ligase_synoviolin_[Amyelois_transitella]
Ontology
GO:0000209 P protein polyubiquitination
GO:0000836 C Hrd1p ubiquitin ligase complex
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0018279 P protein N-linked glycosylation via asparagine
GO:0030433 P ubiquitin-dependent ERAD pathway
GO:0030968 P endoplasmic reticulum unfolded protein response
GO:0036513 C Derlin-1 retrotranslocation complex
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0044322 C endoplasmic reticulum quality control compartment
GO:0046872 F metal ion binding
GO:0051082 F unfolded protein binding
GO:0061630 F ubiquitin protein ligase activity
GO:1904264 F ubiquitin protein ligase activity
GO:1990381 F ubiquitin-specific protease binding
Transcript
Level		FPKM:1.70 TPM:1.43
ORF EntryO_TrvaMG10299_complete:A_TrvaMG_comp25802_c0_seq12
Sequence
(Nucleotide)
TTTTTTTTTGCCTTTATTACATTTTATTATTATTATTAACTACAAAAATAATTTATTATG
TTAAATTGATTTAATCATGTTTTAGTGAAATTTTAACAAATAAACTACTACAAATAGTAG
AAAAGACCAGTGACTCCGAAGTGACTCAATCCAAGTTTGTTGTAAATGATGTTGAGTGTT
CAACAATATTCAATAAAGAGGATGACCTGCTGCAGTTTCAAGATATATCAAACATTCTAG
TCACCAGCAACAAGCCCGTAAAACATGATGTTGAGAAGGACATACCTTTTGTTGAAATAC
CAAACTTGTATCCTGTGAAGCATACCATCACTATGCCACCTGAACATTTCTACAGTGATA
CCAGCAAATACCGTAAGTATATTGACTGTGTAGTGTGTGATACATTACAATGTGTTTGAG
AGTAATAATTAAAATTTAATATTTTCCTACCTAAGCTTTCAAAGATGTAAAATTAAACTA
AGCTATCAAATGTTTCAACTAAACATATTGAACCTTTTCTGTTCCCCTGATAATAAAAAA
TATCAACACTAAATAAACTATTTAATTCACAGCTATCAAAAATAAAGTACAAGTTAAACA
TCCTCACACAACCTGGTTACATTACAACAGACCTGAAGTGAGCAATATATATGAAACACC
AGTCACGCAGAACCAAATACTAGGGCGATCTCTAACCCACGCATTCAATGTGGCTGCAGC
TTACGCAAAGCAATTACATGGGGAGGATGCAAAAGATCTACCAGAACCAGTATTTGTTAA
TTGTATTCAAACAGATGGCAAATTATACCATTTTGGGGTATTGCAATTGAACACATTGAA
TGTTGATGGTAATGAAGGTACAAAAAATGTATGGTACTGCAAAAACAACATAAAACTGTA
TGACTCAAGCAGATACTTTGGAGGAATGCCAGTTCTCGAAAACTATAACAACAAAGTTTA
TGGATATATCAATGCATTATATAATAGTTAATTTAATTGTAAATAGACTGTAGCTTAATA
AAAATAGTACATAGTTTTAATTTGATTTATTTTGGCAAAAGCATTGGTAGGGTTGGCAAG
GAAAATATTGTATGTTGTATTTATGTATTCATTATATTTACATAACATAAATACGACTCC
ATTATCATAACCGATCAAGAATACACAATGCTTACACAATATCAAGACACTTTGTACATA
AATAATATTATAATGAATATTCCCAAACACAAAATGATACAAAACATAACTCATTTATCC
AAAGAAAACTTTTGCAGTCGACGTCTTCTCAACTCTGCAGTGTCATCGTCAGTCTTCACT
CTATCGGAATCAGTAGTGTCAGGCAAATCGTCAGATTTGATCTCAGGTTGGCTGGTCGAA
GGAACTGGAGACGGAGATTTAAACTGAGATGTACTCGGGACTGCATCAACCTCCGTTTTA
ACCTTCACTTCAGGTGCCAGATCAGTTTGCGTTTCGGTTTGTGTTGCCACAGTAACATTG
TTCTGAGCAGTATTCGCGATGGCCGTGGAATATTGTTGCATAAGAAGCACAGAAGCGTCC
AACATTGCCTGAGCCTCGCGAAGTAACTGTAATCTAGCTTCAATGTTCCTTCGTTCGTTG
CCTTCCATTCTCTGCAGCTCGGCCGTGGTCAGCACGGCGAGGTTTGCAGGACGAGGCGGC
GGTGGCGGCGGCCATGCCATTAGGGGTGGCGGCGGCGGCATGTTGGGGAATGGCGGCGGA
GCGGGCGCGGCGGCGGGTGCCGGTGCGGGCGCGGCGTCCGGCGTGCGCGGCGCTCCTCCC
GCCTCCGGGGCGCGCAGCACGTTCAGACGACACGTGGGACACGTCTGTTGTCGCTGGAAC
CACAGCCGCAAACAGGCCGCGTGGAATATGTGGTTGCACGGCAACTTCTTCGCACCTGAA
TGCATTTCCTCTCGGCAGATGATACATTCATTGTCGGCAGCTTCGAGCTCCGCCTGTGTA
GCATCAGGATAGAGGGTGTTCATATTACGAATCGCCCTTCGAGACAACACCACGTCATTG
TATGCTTTCTTGAAACTCCTCATAGCTTCATACATAGGTCGGAATGCAAACAGTGGTAAT
GTATAAATGCGGACCATAACTGCTACAAATCCAATATACAAGAGGACTTTCAGGAAGTTG
ATAGCAAGCTCCGTGTATAGCAGAACTGCAGCTTTGCTCTCCCATGGCGCTTCCCATCGA
GAGTCAATGGCATGAAGGAGATACTTTATGAGTATATTGGCTATCATAATGATGAGTATG
CTGTACTCAAAACCAAACACAAGTTGAACTGAGGGTCCTTTTGATGTAGTGACGTGATAT
GCATGATGGATGAAGTAGAAGTCAGCATGTGCTAACAACATCAACAAGCTTAGTATTCTT
ATATGGAACACCCATCCAATAACAGGACTTCTCTCCATATAGTCAACTCTGTCTTCGGCC
AACCAGTGGAATGCTTTGAGGAACAGTAACAGAGTAAAGAGTGCAATGAACTTTGGATTA
AAATCATCCCTGAACACAGTAAACGCTAAACACGTCTCCGTAATGGCATACCAAGACCTC
TCTATTAAATGCTCAAATTCAGCCGGGCGAAGTTGACCAAAGAATATTTTCCTTAGCATT
TTCCCCACCAATAAAACTAATATAAACGCCTGCAGATACATGACTGCCATACTTGGGTTT
GAATTTGTTAAATAAACTATCGAAGGATAAAATTGTTTCTTATGGTAATATGCATTGCCG
ATAACCACGGTGGTGAGTGCGAGACTGATCACCGTTGCTAACACTGCCTTCATTTTGATA
GTATTTTGGAACTCCTTCAAAATAGAATCTTCATGAGATCTAATTTATTAATTTCTAAAC
ACTCCAAATACATGGATTGTTTCTAAAAACATTTTCAAAACATCATCTCTTAGCAATTCG
AAAAAATATTTTGAGTTTTG
(2960 bp)

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