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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaMG_comp13633_c0_seq1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_pre-mRNA-processing-splicing_factor_8_[Bombyx_mori]
Ontology
GO:0000244 P spliceosomal tri-snRNP complex assembly
GO:0000386 F second spliceosomal transesterification activity
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005682 C U5 snRNP
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0016607 C nuclear speck
GO:0017070 F U6 snRNA binding
GO:0030529 C ribonucleoprotein complex
GO:0030532 C small nuclear ribonucleoprotein complex
GO:0030619 F U1 snRNA binding
GO:0030620 F U2 snRNA binding
GO:0030623 F U5 snRNA binding
GO:0044822 F RNA binding
GO:0070530 F K63-linked polyubiquitin modification-dependent protein binding
GO:0071013 C catalytic step 2 spliceosome
GO:0071222 P cellular response to lipopolysaccharide
GO:0071356 P cellular response to tumor necrosis factor
GO:0097157 F pre-mRNA intronic binding
Transcript
Level		FPKM:23.37 TPM:19.67
ORF EntryO_TrvaMG1643_complete:A_TrvaMG_comp13633_c0_seq1
Sequence
(Nucleotide)
TTTTTTTTTCATAATAAATGAGTTTATTGACTTATACAATACATACAAATGAAAATATTC
TTATCTACTAGACACCCATACAAAACCACAGACAAAATATCAAACAATAGCTTCGATTAT
TTGACTAGTTTTATGCAAACAAGTCTTCTCTGTCGGCGGCTATTGTCGGTGCGGCGGCGT
CCTCCATGGCAGCGAAGTTCATGAAATGCGCCGGCCTGTGCACTTCGTGGTAGAACTCGC
GCGGATTGCCCAATTGCACACCGTATTTCATGTTCGGATCGTGACGTACGCCCATAAAGT
TGTAATTCCAACTGCCTTGCGATGGCACCATGAAATATCCCAAGAATCGATCCGACAGTA
ACATCTGCACTCTTTCATAGTGACTGGGCAAGTAGCCTTTAGGATTGTTACCACGGTCAG
TATTCCTGACTCCCCATTCGTAACCGCTCGGTGTAAGTTTGTATGCAGTTAGTGAACAAG
ATCCAGGTGTGAAAGAACAAGTGATGATTATCGTCTTCTCGCCGTCCCATGAGGAATTGT
CTGACATGATTTTAGCGTGAGATGTGATATCCTGTGGCGACAACTGCGGCAACTCGTTCG
GCTGGGTGTGCATCCACCCGAGAGGTTGTAGGTGCGCGAGAGCTGGATGTTTTGGAAGAT
GTTTCGGCAGGTGCACTTGTTGATGTGTGCCCCACTGCGGAGGCAACACCGCGCAATGAA
CCTCGCGAACCATCGGGTTGTCGCTCGGAGATGTACCATATAAATAACACGCAATCTGTG
CTCTTAAATCGGATATAGTGACGAATTTCTTGAGCAAATTCTTTGGTAGAATATAGGTGT
ATCCACTCTCCTTGATGTCGTCAGAACTAACGTAGATGTGGTTTGTACGAAGATGTAGGT
TCGTCGCTGATATTGCACGTACACGCCATTCCGTCTTAGAACTGAAAGTCTGTGACTCGT
AATTACTGGTGGTAGATGTAATGATCTCGTCGCCATGTTTGTTGACGGTTCGTGTAGTAG
TGGCCGTCAATTGACTCTGCTCCTTGCTCTGCTTCTCAATCTCTGCGATCTGTTGTCGTT
GGGCTGACGGCGCCGATATCTCCATACCGAGAATGATATCACGGATCTCGGATTGTGTGA
GTGACGCTACGTTTACATTATTCTTCTTTCCATAATCAGCTAATATAAGATCCTTGAGTT
GTACTTCGACTTTGATCCAGTCATCGTCACTCAAAGTAGGCCAGATGTGATGAGGCTCCG
TGAATGTTGTCTTGTCCGGTTTCAGAAGTACTTTAGTGCGTTCAGTATTGACGTGCAACG
CTCGAAGTATCAGGATAAGACGACTGAATGCAGTGTATGACGATATAGTCTTCAACCAAT
CATCATATAAATTGAAGAGAACCATCTGAGGTTCTGTTGCCTTCAGAATGAGATCTCCAA
ACTTCTCGACTTTCAGGCAAGCTTGGAACGGCAACTGCAGCTCTGAACCTTTGATGACAA
TGTTCGGGAAATCTAGCAAGTGGACCTCAAGAGGGTCCAACATTCCTTTTCTAGTGACAA
TAATTTGTTTAGGTTGTTCTTCAACGGGCAATGATCGAATCAGAGCAGCCACTTCTTCAG
CTGTCTTCCATTTGGCGAGCTGTCCAAGACGTTTCTGTCCGGCCCATACACTGGTATGAA
TGATCTTGAGGAACAGTTGTCCAGTACGAGGATTGAATATAAAGATAGCACCGTTTATTG
GTTTGGTTGTTAAGTTTCCTTCAAACGTCTTGTGAATGGTCACACGATATACATTGGTGT
CGTCGACGAACCAAATAATTTGATTAGAGAACAACTCTCCATAGTTCTGACTGGAAAGGT
AAGGTTCCGTCGGTTCTGACGAGTACAGTTGTAAAGCCTTACGTATGCGTTCTCGAAGCA
CGTACAAAGCGGGGTTGGCCTTCATTATCTTGGCCATCGCTTGTTGGATCAAAGGTTTGC
AGCCAGGGAACCAATTACCGTACGCACTGTGCAAATTGTAAGCTAAATCAATAGCAATCA
ACAGCCCAGTCGGGGATGGATATATCGACATGTTATCTGTGGTGTAATCCAGAAACTTGG
CTCGGGCGTATCTCTCGATATCGTGGGAATCGTAATCGCCCCAACGCAGCTGAATATCGA
GCCAGTACTTTTGAGTCGTCGTGTTGTCCATTGTGTCTTTTGTATCAGCCAATAAGGATG
GTCGCGACACGTTCCACTTGTATGCCGAGAACAGCAATATGTCGGCACACGATGAGTTCA
TTTTGTAAGATTTACGCGGGTGAATAGTTTCTTTTTGTACTGTCTCGATTTCTAAAGCGT
CCAGTTCTTGATCAAATACCTGACAAAGGTCCATGACGATAGACTCGTGAACCTTTTGCC
ACAAGTGAGCTCTGAAGATTTGAATGAGTGAAATCTTCAATGTTGGAATCTTACCGTGCA
TGAATATGCCCGTAAGATCGAGTTGTACCTGGAAACCGACGTAAACATTGGCTCTGTTGA
TAGTAGGCGACCACCATAAAGTGAAACGACGGTTCGGAATTTGGTTCAAACCAGAACGTT
GGGCGTTCGTCAACTTTTTATACTTCATTGATTCTTCGAAACCAGACGCCTTCTCCCAGA
ACAATCCCTCCCAGGTCGGGAAGTAAGTTCCCTTGAACAGTGTATGTTCTAGGATTCCTT
CAACCCCTCCCAAAGCCTGTATCATGTCTGTCCTGTAGTTGTTCAAGTTCCACAGTTTGC
CGTCGTGGCGCTGGTGTGTCCACCAGAATGGATTCTGTTTTAGGACCTGATACTGTTTGA
ATTCGGTACGTATACGCCATCCTTTGTCGTAAGCGAGAGTGTGTCTGTCCTTTTGGAAAA
GCGTGTTGATACGCGGGATACCTCTATCCCAAGAATCTTCCAAATCTTCTAAAGTCAATC
GCCTATTCTGGGCATTAGCTTCTTGTCTCTTTAATGCATATTCTGCCCACACTCTCTGAG
AATCGACGAATTCAGCTTCCCATGGTTGGATGTATCGATACAAATTCGGAATAAGCTGGT
CTTCGTCGTGAGACATTCCCGAACGGAAATGAGTGATACCGACATCAGTTTGTTTCGACC
AACGTAAATCAGACTGAGGAATGAGCACATGTCCCATAGACAACATTCCAAGACCACCAA
GCTCTTTGGGCGTGTAGAACACGACCGGCGGGAATCTTGAAGGCATTTTAGAGTTCAGCC
CGATCTTGATACGAGTTTGAATTTTGTTTTCGCATTTAACCAGTAAATCGAGAAGTTCTT
GTGTATTGACCACAGCCTCACGGAAGTATGTCATTAAACCAATGAGAGCAGTGTTCCACT
TGTTGACGATTTTAGTGAAGGTAGTTGATCCAGAGGCCATCAGTATTTGTCGCACCCGAT
TGTGGAAGCGAGCTAACGATTCATCGTCGACGCGGAGGTAACATTGCGCCGTGCGTTCTT
TAGTCACTTCGTTCTGAAGGTTCCATACTCCGTCGCGATGAGATAACTCTTCATGTTGGC
TTCGACACTTAGGCAATATTCTGCATTCAAATCCAGCCATATTAAACAATAGATTGGGAT
TGTCCTTTGAATAAACAGATACGAAACTGTTCTCCCATTGTATTGTTGTCACAGAACGTG
GGAGACGATTCTTTATGTCCCAAAATACTGCGCGACCAAGATTAACATCATGCTTCATAA
GTCTCATTCTTGCATCCCGAGGCCAGCACTTCTTGTTGTTATAACCAACAATATTCTCAT
TGTTAGGATCTGGATGTTCAGTTAAATAACGCTGAATCAAATCTCTGGCTTCCTCCGCCG
AGAATCTGAAGAAGATATGAATCCTGTCAATGTATCTGCAGTACAATCTAATAGGATGAG
CTGTTTCCGTCTGTCTGTCTTGATACGAGAGGAAATCGTTCGGTAGTTGCGGTGGTCCCG
CCATTTCACTGGCTCTTTGCAAACCGAGAACCAACAAATCAAGCACTAAGCCATAGTACT
GAACTATGAACGAAGCAAACTGCAGCCCTCGAATTATACCGTAGGAGTTTGTATGGTTCA
TGTCCTTATAATTAATTACGACGTTATTTTTCGCAGTCATGTAATCGGCAATGTTGTGAT
CGACAATCAAACGCAACAATCTGTTAAGGAGCGTTAAATCTATCTTTTCGTATAGTTTCT
CGAAACGAGACTCCAATAAAACATTACATTCACCTTCGCCCACTTCCCATACATCTTGTA
AATTGTTGATTCCTTGACACCACTTGTAGACCAACAATGGTGAGGGTTCCGTATCGGCCG
GTTTGACCCACGGCGGCAGAAGACGCCTCTTATCGGCCTCGTACCATAGATATTGATCTA
GATACGCGTCAGTTATCTTTTCTAGCGGTTCCACGTCGTACACCGGCACTAAATGCGAGT
AGAGATCCATAAACTCTATGCCCACCTCTCTAAAAGTCCTTTGAGTTAACAAATGACGTT
TGATTCTGGATAAAGCTTCGTGAGGATTGTCGTAAGCCTGTTCAATGAGTCCCAATTCCT
CCCTCTGACTCTGATTTAACCTAGATTTGACACTGTATGCTTCTTTCAATCTTTCGAGAG
CCAAGATCAACAGTTTCGTGTCGTGTTTGTATGAGAGCGGCGGGAAGGGGATTGGCGCGA
AACGACGCGATTCAAGCCAATGCACTGTTGTAGTGTAGATGGCTACGGCTTCTTCTGGAG
AAATGTAGGGACCGTCCTTAAGATAATTATGTTGTCTCTCCTGTTCCGCTTTCAAGTACA
ACCGCGTCAGTCTACCGAGATTTTTCTTGCAGACTGTTTTGTCGACGGTAGCACCACGTC
GTATACGTTCTCTGTTGTAATGGGCCGTGTTCGTCCACCAATCCGCCTTCATCTTTACGT
ATCGGAGAATCATGTTCTCTATTGGGGTCGGAAGACCGGGTACTTTCCATGGAATGTTTG
CCTTCCAGCACCTCCAAGCTTCAGACAAATGCTGCAATATAGTTCTTGCTTTATTCTGCT
TGATACCCTCCGGCATCATGTCGACGATGTCATGCATCACTGAAGCACGCAGCTCGAGGT
CGAAGTGAGATTCGACACGCTGCTTGGTTACCGTCTTGGCTACACCTTTAGAATGTCTTC
CCTCGAACTGCCTGGACAGTAAGTTTCCGAGCCAACGTTCCAGTAGCGGGGTGATACCTC
GCATGAAGAACAACCAAACTCGCCAACCAGGCGCCCAGAAACCACAACCAGGACCTTTCG
ATACTGGACCAGTATTGAACCGGTAGTAAATCAAATGCTTCAAATCCTTGCACATTCTGA
TCTGCCTCATCAGTTTGTACTTGTAACGGTACATTCCAGTTAGTTGTCCGACGTGTGCAA
ATATGTACTGGAGTCCATCAGCCAGTTGGAATGAGTCCACGTTGTTGAGACGATATTGCA
CGTGCGAATCGACTATCAGCTTTGTTAGACGAAGTATTTCACGACACAAGTGGAAGGCAT
TTCCAAATCGTGACTTCTTTCTTTCCTTCGTGGTGAGCGTTTTTACTGGTTTCAAGTTGA
AATTGTAGTCCAAATGGAGGTAGTTCAAGTTCTTACGATGAATAAGAAGGTTGAGCATAT
TGTAGCCTTGACGGCACACTTGAAGACCAGCTTCGACCCAATCCAAGGTGGTTGTTTGGA
AGAACTTTGTTGATTTGAATGAGCGGAATAGATACCTTTTCTTCTGTGGCTTAGGTGGCC
TGTGTTTCAAAGAATTCAGAACATAATACTTGAGCAGTTTCTGGTACGAAACGCGGACTT
TCACGGGTTGTCCTGGAGGGCAATGTTCTTTGTACCAAGTTTTTACTAGAGGAACATCTA
TGGCACGACGTGTACGTCCTGATCTCATGCTGAAAGGTCTTGGCGCCCACAATAGAGCGA
TGCCGTTCGCAGTATTATCAGTGTAAAGTGCGGTTTCCTGTAAAAATGGCGCTACTTCAT
CAGGCAATGCAAAATCGTCCTCCTCCGGGACTGGTTCAAGAGACTTCACTGAGTGGCGAT
GAGAAATTGGGTTGATGAGGGGGTCGAAGTAAAACGCGGGCAGATCGGGATCTTCAGTTT
TGATGTAAACTACATTTGGTGTGTGATACCAAGACAACTGGACGAAATGCGGTAGATTAT
TGTACAGATAGGGAAAGGCGATCCTATACTCCGTTCTTATAGGCTGACGAATGATGATCT
TATTGATATCATTAAACTCATTCCAGTCCTCATCACCTGCCGAATTATCCTTCACAAGTG
GTTCGAACTTCGGTCCACCAGGAATGGCCATGTTCAAAGCTTTAGCGGTGAAGAAACTCT
TAGAGTCAAAGAGATAAAAGTAGTTGTCATCTACCAAATCGGTTAATAGCTGATTCGCTA
AACGGTACAGTGTCGCCATTTGCGGAAGTGTCAAGAACCAGCGACGGTATGTCGATCCAT
TCACATGTTTGGTGTCAATCAGTGGTTTGTGATCGTAGAACCAAGACGCCACTGCTCTAT
CTTCTTCAGGATCTAGCTCAATCTGAATAGGCTCTAATGGTTCGACATCTAATACGTTAT
CAGCGTAATCGAGGGGAGGTTCTTCATCATCAAAAGGCGGGAACCTCATACGTTTGAAAT
GCCTACGATCGCGTTTCTCACGTCGCATCATGATCCACATAGTGCCCCACTGCGCTATGT
AAACCGGTTCAATAACCCAAGGTATTTCGTTGACGAATGTTATAGCTCCAGTGATATGGT
AGAGGACCTTGACATCTCTTATCTGTTCCCAAGGCATGGGCATGTTTTCTAGAAGCTTCA
TGACTGCGTGAGGCATGTATTTCAAAGCTCCGAGGTATACTCGTTTGTCGTGACGGTATT
TCCGACTTGTCATGTCCCCGTGATCCCTGATGATCTTTCGGATGTGTTCTGGAGGCATAT
CTTCTTTTTGGGCGTCCACGAATCCGAATTTGCGCTTTTCGGCAAAACGCTTTGATTGCA
GCTGAAGCCATTTTTGAGATTTTTCCTTGATCTTCTCTTCAGGAACATGCGATGGTTTGG
GCGGCTGTGCAGGCGGCACGGGAGGCGCTGCAGCCGCGGCCGCCGCGTGCGCTTGAAGCG
CCGCTTGCTGAGCCGCCGCCAACTGCTGCTGCGCCATCATCGTGGCCCAGGGGTTGGGCC
CCAGCAGGTAAGGCGGCAGCGACATGGCTGACCGCCTTTTTTATGGCTTCTAACTGATAA
TGTATTTTGTTACATGGAAAACGTCAATTTCACGATGCATAACACAATTTACAAACAAAT
TTGATACAAATCACTCCGCTTGCTTTTGGCGGCCATTTG
(7359 bp)

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