SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaMG_comp13320_c0_seq4
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_heterogeneous_nuclear_ribonucleoprotein_87F-like_[Amyelois_transitella]
Ontology
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0001745 P compound eye morphogenesis
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0005703 C polytene chromosome puff
GO:0010906 P regulation of glucose metabolic process
GO:0019233 P sensory perception of pain
GO:0030529 C ribonucleoprotein complex
GO:0033119 P negative regulation of RNA splicing
GO:0036099 P female germ-line stem cell population maintenance
GO:0043565 F sequence-specific DNA binding
GO:0045727 P positive regulation of translation
GO:0048027 F mRNA 5'-UTR binding
GO:0048477 P oogenesis
Transcript
Level		FPKM:1.27 TPM:1.07
ORF EntryO_TrvaMG1322_complete:A_TrvaMG_comp13320_c0_seq4
Sequence
(Nucleotide)
GCGTTGTGCTGGGGCGGCGTGGCTTCGGTAAAGAGAGGTCGTTTTGGCTGCCGTGAATTT
GTGATTCAAAATTTTAAATTGTGTAAAGCGTGGTCTTAATTTTGTTAATTTATTTAGTCA
GTACCGTTTAGGGTTTAATTCTTAAAATATGAGGCCGCAAAATGGTGATGATGGATATGA
AGAGCCAGAGGTTCACCGCAAAATTTTCATTGGTGGCCTCAACTATAAAACTACAGACGA
ATCTCTCAAAACGCATTTTGAAAAATGGGGAGAGATCGTAGATGTCGTCGTAATGAAAGA
TCCAAAGACGAAGCGGTCTCGAGGCTTCGGTTTCATCACGTATTCCAAGGCGCACATGGT
AGATGACGCCCAAAATAACAGGCCGCATAAAATCGATGGACGGTTTGTGGAAACTAAACG
CGCCGTCGCAAGGCAGGACATTAAAAATCCTGAAGCCGGCGCGACAGTTAAGAAACTCTT
CATAGGTGGAATAAAAGATGATCACGAGGAAGAAGAATTAAGGCAATACTTTTCCAATTT
CGGAAATGTTCAAAATGTGAGCATTGTCACTGATAAGAACACTGGAAAGAAACGTGGTTT
TGGATTCGTAGAGTTTGATGACTATGATCCAGTTGACAAAGTTTGCTTGAATGGGCCTCA
CAAAATTAATGGAAAGCCATTAGATGTTAAAAAGGCACTACCTAAAGATGGTTCTGACCA
AAGAGGAGGCGGTGGTGGCGGCGGCCGTCAAGGCGGTGGAGCTGGCCGGAATGACAGTTG
GGGCAATTCAGGAGGTTATGGTAACAACCAAGGTGGTTGGGGCGGAAACTCCAACCCATG
GGATAATGGCCAAGGAGGCTGGGGTAACCAGGGAGGCGGCGGCGGCGGTGGCGGTGGTTA
CGGAGGCGGTAACTACGGCGGGGGTCAAGGCAGAGTGAACAGATTTTAAGTCAAGTAAAA
GGAGGCAAAGTCATGTGAGTATGGGTTTACATTACAGACAAGCACACATTCACTGTTACC
TGAACACATATTGGTCTAAGTCTACATTTCTTCCAGAGCACTACATAGCATTAATTGAGT
ATAGGAATAGAGGCTGTAGTATTCGGCGTATAGTTAGTTCCGAGTAATTAATGCTATGCA
GGTAGTTGGATCTGTTAGTGTATTATGACGTGTGACTCACAACATTTTTTCAATCTCTAG
GTTTCGTGCTAAGTACACTAGTAAGGCAGAGTTAAGGGTGCTAGTGTAGGCAGTACGCTC
CGGAGCACTAGATATCATCATGGTCCACACGCGAGACCACCTAGAAGCCTTCAGGATCGT
TTGTTAGATTTTAGAGAAGCTCTTAGCTCGTTTATTTAAATCAATCATTATTTATGTGAA
CTGAATTGTAAGGTCTTCTATGTATTTAATGTAGTAGGTACTGAGGTACTTATCGTGACA
TATTTTTAAGGATATTAGCCATGTAAAATGATTATTAGTTAATTTTATTTTTGAAGTAAG
TACAAGTTAGGATTATCTGTATCAATTCCTCAATATACATTAGGTAAAATATATCAGTTA
TGTTGATATTTTAGTTAGATTTTTCAATCATGGATGGTTTTGAAATTCCTGACTTTTACT
CAGTATTAAGTTCTCAAATAACTGTGAAATCAATTAGGCATAAAACTTATAGGTTAGTGT
ATATTATAATATAATAAACTTTAATACATAATGTAGGAGTGTTTATTTAGATCTGTATAT
AGCCCTTGTTTATTTTTCCTAGGTAATATGAAAGATACGTGGTTAGTAATAGTAATATCC
ACTCATTCAAGATTAAATAAAGAATAGATATAGACTTGTATTGTGGTTAAATTTGTGTCC
TCATATTAAATAGGCAAAGAAAGAACAAAAGGAATGAAATCAAATTATTCAATCGACACG
ATACTGAAGAAAGTGTAGCACAAAACAAGTCTAATCATGATCCGTTCAGATATATCGTAT
TTTAGCAAACAAGTTAAATGATTCTAATGTATTTTATTTAGTCCTAGAATCCCTGCTTTT
CGTTTGACTCACGTTAACTTTTTAATAACAGCGCGTTCGCGATCATGAGAACGTTGATCA
ATTAAATCACAAATTTCGACAAAACGTTTAAAATTTACTGCAGTCGTTCGTAAAGTTCAA
TCTCGGCGGTCCGTAGTAGAA
(2181 bp)

- SilkBase 1999-2023 -