SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaMG_comp12986_c0_seq2
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_E3_ubiquitin-protein_ligase_MARCH6_isoform_X2_[Papilio_xuthus]
Ontology
GO:0000835 C ER ubiquitin ligase complex
GO:0004842 F ubiquitin-protein transferase activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0008270 F zinc ion binding
GO:0010498 P proteasomal protein catabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0019899 F enzyme binding
GO:0030176 C integral component of endoplasmic reticulum membrane
GO:0031624 F ubiquitin conjugating enzyme binding
GO:0036503 P ERAD pathway
GO:0046872 F metal ion binding
GO:0070936 P protein K48-linked ubiquitination
GO:1904264 F ubiquitin protein ligase activity
GO:1990381 F ubiquitin-specific protease binding
Transcript
Level		FPKM:0.74 TPM:0.62
ORF EntryO_TrvaMG1111_3prime_partial:A_TrvaMG_comp12986_c0_seq2
Sequence
(Nucleotide)
GGAATACCTACGTGCAGCAGGTCGACGATAAAAATTATCAGCAATTTGTGTTTTTTGTTA
CTTTACTGTTGAGTTTTGTGCTATGAGGTGTTTTTAATATTAGTGACAAATATCGAAGAA
ACAAAAAAGACCACTATAAATAGTAACGTTCATCTGATTCTTTTGAAACAAGTCGTATTA
ATTCGGTTCGACAAATATCGAAGAAACAAAAAAGACCACTATAAATAGTAACGTTCATCT
GATTCTTTTGAAACAAGTCGTATTAATTCGGTTCGACAAACTGGAAGATAATGATGGACT
CAGACTCGTCCGGTGCGGACTTCTGCCGGTTTTGTCGTTCAGAAGCAACGTCCGACCGGC
CCCTATTCCACCCGTGCATCTGCACCGGTTCGATTAAGTGGATTCACCAGGAATGTTTGG
TACAATGGATGAGATACTCCCGGAAGGAAATCTGCGAGTTGTGCGGCCATCGGTTCTCGT
TCATGCCAATATACTCGCCGGATATGCCTCGCAGACTGCCTATCCGCGATGTGGTCGGCG
GTCTCGTGATGTCCGTTGCTTCCGCCGTGAAGGATTGGCTGCATTACACCCTAGTGGCCT
TAGCCTGGCTCGGTATAGTACCGCTGACGGCGTGTCGGACCTACAGATGCCTGTTCTCGG
GATCGCTGGGGCCAGTCATGTCATTGCCATTTGAGATAGTCTCTGCAGAGAATCTGGCAA
AAGATGTTTTCTCAGGATGTTTCATAGTGACATGTACTCTGTTCTCTTTCATTGGGCTTG
TTTGGCTCAGGGAACAGATAATGCATGGGGGTGGCCCTGATTGGATGGAGAGGGAAAATA
TACAGGCTGCCCCTGCTGAAGACATGCCTCAACCTGAGAATAACAATGAGAGAGTGAATG
ATGCAGCTGGAGAGGACGGGCCTCGTGAGGAAGGTAATGCAGAAGGGGGCGAGGAACCAC
TTGTGGGTGATGAAGCAAACTGGAACCCCATGGAGTGGGACCGAGCTGCAGCAGAAGAAC
TGACCTGGGCTCGACTCCTCGGTCTTGATGGCTCAATGGTGTTCCTAGAACATGTATTCT
GGGTGGTATCCCTCAACACTCTTTTCATTGTGGTGTTTGCATTCTGCCCATACCACATTG
GGCGACTGGGTGCAGCATTGGCCGGGCTATCAACAGAAGGTCCGTATGCTGGGCCGCTGA
CGGCTCTGTCGGGCTATGTCTTTGTGGGTGCGATACTGGCAGTACTACACGGATTGGCTT
CATTGTTTCGACTGAGGAGTGCTAAGAAAGCACTAGGATTCTGCTATGTTGTTGTCAAAG
TTGCATTACTTTCAGTCATGGAGATCGGTGTGATCCCGCTCATATGCGGTTGGTGGCTGG
ATCTCTGTTCCTTATCAATGTTCGACGCAACCCTCAAAGACCGCGAGACAAGTCTTCAGG
CCGCGCCATGGACTCTTATGTTCATACACTGGCTAGTCGGAATGGTCTACGTGTATTATT
TCGCGTCATTCGTGCTTTTGCTAAGAGAAGTGTTGAGACCTGGCGTGCTTTGGTTCTTGA
AGAACTTGAATGACCCTGATTTCAGTCCGATACAGGAAATGATCCACTTATCAGTGATGT
GTCACATCAGAAGACTAGTTCTATCAGCGATGATCTTTGGGTCTGCTGTACTGTTCATGT
TGTGGATGCCAATCAGAGTGATCAAGTATGTTCTCCCCGGGTTCCTGCCGTACACAGTGT
CGGTACATTCGGAAGCACCAGTCAATGAGTTGAGCCTTGAACTACTTCTTTTACAGGTAA
TACTTCCGGCTCTGTTAGAGCAGTCGCACACTAGGACGTGGCTCAAGATGGCGGTGCGTG
CGTGGTGTGTGTGCGCTTCCGGTCTACTCGGACTTAGATCATATTTACTGGGCGAGTTGT
CGCGACAGAGCGATCCTAATCCGCCTCCGCACTTGCCGCATCAACTGGGCGTTGCTCATC
AAGCCCTAATGCGTCGTGACGGTCCATCGGCCGTGGAGCCCTATGTGCGTGTGTCGTGGT
TCCCGCTGAGACTGGCCGCTTTATTGGTCTTAGTCTCCATATCGCTTGTATTGGCTAGCG
CTATGACACTTGTAATTCCTGTAGCGATTGGCAGGAAAGTAATGGCGTTGTGGATGCCCA
AAGCAGCGGACAGAGTTCACGAATTGTACACTGCGGCTTGCGGTATGTACGTGAGCTGGG
CGGGCGGGCGCGCGGGCGTGGCGGCGGCGGGCTGGGTGCGGGGCGG
(2266 bp)

- SilkBase 1999-2023 -