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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaMG_comp12986_c0_seq1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_E3_ubiquitin-protein_ligase_MARCH6_isoform_X2_[Papilio_xuthus]
Ontology
GO:0000835 C ER ubiquitin ligase complex
GO:0004842 F ubiquitin-protein transferase activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0008270 F zinc ion binding
GO:0010498 P proteasomal protein catabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0019899 F enzyme binding
GO:0030176 C integral component of endoplasmic reticulum membrane
GO:0031624 F ubiquitin conjugating enzyme binding
GO:0036503 P ERAD pathway
GO:0046872 F metal ion binding
GO:0070936 P protein K48-linked ubiquitination
GO:1904264 F ubiquitin protein ligase activity
GO:1990381 F ubiquitin-specific protease binding
Transcript
Level		FPKM:16.57 TPM:13.95
ORF EntryO_TrvaMG1110_3prime_partial:A_TrvaMG_comp12986_c0_seq1
Sequence
(Nucleotide)
GGAATACCTACGTGCAGCAGGTCGACGATAAAAATTATCAGCAATTTGTGTTTTTTGTTA
CTTTACTGTTGAGTTTTGTGCTATGAGGTGTTTTTAATATTAGTGACAAATATCGAAGAA
ACAAAAAAGACCACTATAAATAGTAACGTTCATCTGATTCTTTTGAAACAAGTCGTATTA
ATTCGGTTCGACAAACTGGAAGATAATGATGGACTCAGACTCGTCCGGTGCGGACTTCTG
CCGGTTTTGTCGTTCAGAAGCAACGTCCGACCGGCCCCTATTCCACCCGTGCATCTGCAC
CGGTTCGATTAAGTGGATTCACCAGGAATGTTTGGTACAATGGATGAGATACTCCCGGAA
GGAAATCTGCGAGTTGTGCGGCCATCGGTTCTCGTTCATGCCAATATACTCGCCGGATAT
GCCTCGCAGACTGCCTATCCGCGATGTGGTCGGCGGTCTCGTGATGTCCGTTGCTTCCGC
CGTGAAGGATTGGCTGCATTACACCCTAGTGGCCTTAGCCTGGCTCGGTATAGTACCGCT
GACGGCGTGTCGGACCTACAGATGCCTGTTCTCGGGATCGCTGGGGCCAGTCATGTCATT
GCCATTTGAGATAGTCTCTGCAGAGAATCTGGCAAAAGATGTTTTCTCAGGATGTTTCAT
AGTGACATGTACTCTGTTCTCTTTCATTGGGCTTGTTTGGCTCAGGGAACAGATAATGCA
TGGGGGTGGCCCTGATTGGATGGAGAGGGAAAATATACAGGCTGCCCCTGCTGAAGACAT
GCCTCAACCTGAGAATAACAATGAGAGAGTGAATGATGCAGCTGGAGAGGACGGGCCTCG
TGAGGAAGGTAATGCAGAAGGGGGCGAGGAACCACTTGTGGGTGATGAAGCAAACTGGAA
CCCCATGGAGTGGGACCGAGCTGCAGCAGAAGAACTGACCTGGGCTCGACTCCTCGGTCT
TGATGGCTCAATGGTGTTCCTAGAACATGTATTCTGGGTGGTATCCCTCAACACTCTTTT
CATTGTGGTGTTTGCATTCTGCCCATACCACATTGGGCGACTGGGTGCAGCATTGGCCGG
GCTATCAACAGAAGGTCCGTATGCTGGGCCGCTGACGGCTCTGTCGGGCTATGTCTTTGT
GGGTGCGATACTGGCAGTACTACACGGATTGGCTTCATTGTTTCGACTGAGGAGTGCTAA
GAAAGCACTAGGATTCTGCTATGTTGTTGTCAAAGTTGCATTACTTTCAGTCATGGAGAT
CGGTGTGATCCCGCTCATATGCGGTTGGTGGCTGGATCTCTGTTCCTTATCAATGTTCGA
CGCAACCCTCAAAGACCGCGAGACAAGTCTTCAGGCCGCGCCATGGACTCTTATGTTCAT
ACACTGGCTAGTCGGAATGGTCTACGTGTATTATTTCGCGTCATTCGTGCTTTTGCTAAG
AGAAGTGTTGAGACCTGGCGTGCTTTGGTTCTTGAAGAACTTGAATGACCCTGATTTCAG
TCCGATACAGGAAATGATCCACTTATCAGTGATGTGTCACATCAGAAGACTAGTTCTATC
AGCGATGATCTTTGGGTCTGCTGTACTGTTCATGTTGTGGATGCCAATCAGAGTGATCAA
GTATGTTCTCCCCGGGTTCCTGCCGTACACAGTGTCGGTACATTCGGAAGCACCAGTCAA
TGAGTTGAGCCTTGAACTACTTCTTTTACAGGTAATACTTCCGGCTCTGTTAGAGCAGTC
GCACACTAGGACGTGGCTCAAGATGGCGGTGCGTGCGTGGTGTGTGTGCGCTTCCGGTCT
ACTCGGACTTAGATCATATTTACTGGGCGAGTTGTCGCGACAGAGCGATCCTAATCCGCC
TCCGCACTTGCCGCATCAACTGGGCGTTGCTCATCAAGCCCTAATGCGTCGTGACGGTCC
ATCGGCCGTGGAGCCCTATGTGCGTGTGTCGTGGTTCCCGCTGAGACTGGCCGCTTTATT
GGTCTTAGTCTCCATATCGCTTGTATTGGCTAGCGCTATGACACTTGTAATTCCTGTAGC
GATTGGCAGGAAAGTAATGGCGTTGTGGATGCCCAAAGCAGCGGACAGAGTTCACGAATT
GTACACTGCGGCTTGCGGTATGTACGTGAGCTGGGCGGGCGGGCGCGCGGGCGTGGCGGC
GGCGGGCTGGGTGCGGGGCGG
(2181 bp)

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