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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaMG_comp12909_c0_seq1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_mRNA_turnover_protein_4_homolog_isoform_X2_[Amyelois_transitella]
Ontology
GO:0000027 P ribosomal large subunit assembly
GO:0000956 P nuclear-transcribed mRNA catabolic process
GO:0002181 P cytoplasmic translation
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
GO:0022625 C cytosolic large ribosomal subunit
GO:0030687 C preribosome, large subunit precursor
GO:0031965 C nuclear membrane
GO:0042254 P ribosome biogenesis
GO:0044822 F RNA binding
GO:0070180 F large ribosomal subunit rRNA binding
Transcript
Level		FPKM:14.91 TPM:12.56
ORF EntryO_TrvaMG1040_complete:A_TrvaMG_comp12909_c0_seq1
Sequence
(Nucleotide)
GAGGTTCTGTTATGTTTCGTCTTCTTCCATTATTTCATCGTCTTCATGCTCATTCTCGTT
TTGGTCATCATCATCATCATCATTGTTTGGATCTTCTGCATCACTTGGTATATCAATATC
TTTATGGAAACCTTTACCTTTAGTCCAGTGACATTTGATCACTAACTTAAAATCTGCCAT
CTCAATCCCTAATAATTTTAATATACTTGCTTGTTCTGGTGTAAGAGGTGATCCTTTTTT
ACATACTTGATATTCTTTTATAAGATTGATGACACCTCTCTCTAAAGAGGTGGGTAACCC
TAATCGTCTGAGATGAGGTTCAATTGTGTGTGAAAAGTCTGCTAGGGGTCCTTTAGGGAG
CACAACATCTTTAGTAGCAACAAAGCCAGCTCTTGCATATTCAGAAGCTTGGTAATTTTT
AAACCAGAACAGTACATCAGGTACATCCTTATTTGTCATGAGTAATCCACACTGACCCTT
CAGTTTTTTCGACAACAAATTAAGATGTTCTTCTATTTCATCACTCTTTGTCTTGCCTAG
AGCAATTGCCATAACTTTATTTTTTCCAAAAAAGAATCTTGAATCTTTCCAATCATTTCT
CAAGTCTTTCAGCTTTGTATTTCTCATATTATTGATAGTAAACAAAAATATGTGCTCATA
TTTGTTCAACGAATTTCTAATCTCTTCTATGATTTTCTGTTTGTGTACTAAACCTTTTTT
GTTGGTTTTAGTTAGAGATACTTTCTTGTCTCTTTTAGATTTCGGCATATTTCTGTTTGA
TTATATATTTCAGAACATTAATATAAACATTTAAACCTCTATAATAATATATGTTATTAT
TCACGTGGGTTACTAAATTCGAAATTGTTAGGTTATGCGTGCCCGCACACCTAAAAACGT
ATTGACAATACTTTCGATCGA
(921 bp)

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