SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaMG_comp12889_c0_seq1
Scaffold_id
NCBI non-redundant
(nr)		spliceosomal_protein_on_the_X_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0000375 P RNA splicing, via transesterification reactions
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005689 C U12-type spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0044822 F RNA binding
GO:0048026 P positive regulation of mRNA splicing, via spliceosome
Transcript
Level		FPKM:11.38 TPM:9.58
ORF EntryO_TrvaMG1029_internal:A_TrvaMG_comp12889_c0_seq1
Sequence
(Nucleotide)
GGCGGCGGCGGCGGACCAAAACATGGCGGCCCAAACGGCGGCGGCGGGAAGTGGTGGAAC
GGGGGCGGGGGCGGCGGAGGTCCTGGTGGCGGCGGCGGACCCGGCGGTGGCATGGATGAC
GGGGGTGGCGGCGGCGCGGACATCGGTAATGGGGGCGGTGGTCGCGCGTTCATGGGTGGG
CCTTGTGGGGGCATGGGAGTGGGAGTTGGGGGCGGTGGAGGTGCCATTAATACAGGACCC
ATTAGCGTGGGAGGGGCGTCCGCGAACAACTGGTGAGGTCTGTCCGCGTGTGATAGAGGA
TTTTGAGCTGCAAGTAATCTTTCCGCAGCAGAACCGTGTCTTTCTCCTTTAACGTCCTTC
TTAAATGCATAGGAAACTGATATAGGTCTGTTACATAGGTACTGATTGTTCATAGCTTCA
ATGGCCGCATCAGATGCTTCGAATGACGCAAAGTTAATAAATGCAAATGCTTTGGAATTC
CCTGTTTCTGGATCTCTCATTACCTTAGGTGTCTGTAATATGACTCCAAATGCTGAGAAT
GTGTCGTACAATAATTTTTCATCCACCTCGGGATCCAAGTTTCCAATGAACACATTGGCA
CCAACATCCAAGTTCTTCTGATGAGCTGATGCCTTATTCACTCTTACTGGCTTTCCATAC
AACTTTATCATATTCATCACCTTAATTGCATAATCAGCATCTTCTTCGCCCATAAATTCA
ACAAATCCATATCCTTGGTGTGTCTGTGTCACTCTGTCTTTGGGCATGTGAACATTCACG
ACTGGTCCGGACTGCACGAAGAGCTCCCATAGTAAGCCCTCTGTAACTCTGTCGTCCAAA
CCTCCAACGTAAATAGTTGCATCTTGATTTCTTTCAGCAATCGGTCCCGCTGCCATTTTT
TGGCAGTTGTTTACGTTGTTG
(921 bp)

- SilkBase 1999-2023 -