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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaMG_comp12123_c0_seq1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_mismatch_repair_endonuclease_PMS2_isoform_X2_[Bombyx_mori]
Ontology
GO:0003677 F DNA binding
GO:0003697 F single-stranded DNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006298 P mismatch repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0015630 C microtubule cytoskeleton
GO:0016446 P somatic hypermutation of immunoglobulin genes
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0030983 F mismatched DNA binding
GO:0032138 F single base insertion or deletion binding
GO:0032300 C mismatch repair complex
GO:0032389 C MutLalpha complex
GO:0032407 F MutSalpha complex binding
GO:0042493 P response to xenobiotic stimulus
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
Transcript
Level		FPKM:1.92 TPM:1.62
ORF EntryO_TrvaMG586_5prime_partial:A_TrvaMG_comp12123_c0_seq1
Sequence
(Nucleotide)
TTAGGTTTCATAATAACACAACTAGAAGATGATATATTTATTATTGATCAGCACGCAACT
GATGAGATTTATAACTTTGAAACTTTGCAGAGAACTACAGAGCTGACGAGTCAAAAATTA
GTAATACCACACCAGCTTGAGCTTACAGGTGTAAATGAGCAGATACTGATGGACAATTTA
GAAATTTTTCGTAAAAATGGCTTTACTTTTGAAATTGATAAAGAAGCATCACCTACAAAT
CGTGTAAAACTTTTGACAATTCCAATGTCGAAAAATTGGATATTTGGAAAAGAAGACATT
GAAGAAATGCTTTTCATGTTAAGGGAAGCTCCATCTGCTAACTGCAGACCGAGTAGAGTA
AGAGCTATGTTTGCATCACGAGCATGCAGGAAGTCAGTTATGATTGGAACCGCTTTGAAA
AAATCCGACATGCGGGTACTTGTGGATCATATGGCTGAAATTGATAAACCGTGGAATTGT
CCACACGGCCGTCCCACCATTAGGCACTTGGTGAACTTAGCTATGATACACACTCAAGAT
AGCAGTTGTGATAAAAGTTAAATACGGGTTTTTAATCTATCAG
(583 bp)

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