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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR9894c9_g1_i2
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_U1_small_nuclear_ribonucleoprotein_A_isoform_X1_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005685 C U1 snRNP
GO:0005686 C U2 snRNP
GO:0006397 P mRNA processing
GO:0007539 P primary sex determination, soma
GO:0008266 F poly(U) RNA binding
GO:0008380 P RNA splicing
GO:0017069 F snRNA binding
GO:0019099 P female germ-line sex determination
GO:0030529 C ribonucleoprotein complex
GO:0030532 C small nuclear ribonucleoprotein complex
GO:0030619 F U1 snRNA binding
GO:0030620 F U2 snRNA binding
GO:0035614 F snRNA stem-loop binding
GO:0042802 F identical protein binding
GO:0043234 C protein-containing complex
GO:0048477 P oogenesis
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
GO:0097158 F pre-mRNA intronic pyrimidine-rich binding
Transcript
Level		FPKM:5.48 TPM:5.37
ORF EntryO_TrvaFAMAMG10693_complete:A_TrvaFAMAMG_TR9894c9_g1_i2
Sequence
(Nucleotide)
TTTTTTTTCATTTTGAGGTATCACAGTCATATCACAGCTGTATCAGAGAGCTGTTTAGGC
GAAGTGCAATGCACAAAACAGTTCTCAGTTTTGAAATTTATTTAAAGTTAAAAATTAAAA
ATACATGAGGTATATTAAACTATTTCTTAGCAAAAGTAATCTTCATGGCATGTGTTGGTG
TTATTTTGAATCCTTGTAATGCTTCCTTGGCTGCTGCAGATTGCATTTCGTTACCAAATT
CAACAAATGCAATGTCATGACGATTAGGCACAAGACGAACTTCTTTGAAGCCTGGAAACT
GGTTGAACAACATAGACAACATCATCTCTGAAGTTTCATCAGGAAGGTTTGTCAAGAACA
GAATCTGGTTTGGTGGTTGTTCAATATTGACATTATTGAGGATACCAGCTCCTGGAAGAC
CATGACCCACAATCCTTGTTGGATCCTTGTTCTTCTTCTTTTTACCGTCATCTGCACCCT
TTGGCATTTTGGGTCGTTTTGGTCTTTCTTGGAAGGTTCCTTTGCTTTTAGCAATTAGAT
CACTGTCAGTTTTTGAATACTGAATTCTCATTGGTTTATCATAAAATGGGAAACCTTGCA
TACTTCTTAGTGCAACTGTAGCACTAGCTATTTCTTTAAATATAACAAATGCTTGACCGC
GCATCTTTAATGTCTTCAACGCTACTATATCTAATATCTGACCAAACTGTGAGAAGATAG
CGTAAAGTGATTTTTTCAATTCTTCCTTTTTGATCTTTTCATTGAGATTGTTGATGTATA
TGGTGTGATTGGGACGAATATCCATCGTCATTTTCACAATTTATACAATTCCTAGGTTAA
ACAAAAAGAAATTGTGCGAAATAAACTTAGCTCAGTAGCAATGGTGTGCTTGTATTCAAT
TGTTGAATTAATACAACAGTACGTTTAGAATACGATTGAAAGTTAAAACACGGTTGAAAA
ATAACCACAAATTACACCGCGCATCCGCTTGCCGACGCCAGGGCTGTGACATTCCATGCA
AAATTGACAGTTCTTAGTGGAAGCGGTACGCATGTTGAAAATCCAGCAGAGGGCGTCACC
ATTTTTTGTCATTAGTCTTCATTGGCTTTGGCGACAAAAATAAACGCTTTCTTTTGAATT
AATATAATTATTATAAAAAAAATCGTCTTTTAAATTATTTATATTTTACTTATTTATAAA
AATATGAATGAACATAGTATTCAGAATCTATGTTAAATCATTTTTAATCGGGTATTTAGA
ATCTATACGACTGAATTGAATTTTGGATTTTAGTATAATTATTCCAGGACCAAAGTTTGA
TTTTAAGTCATAAGTAGTTTACATTAAACAGAAACTGGTGATTTTCATAATTCTTTCTAC
CTCAGAAAAAGAAGATGTGTGCCCGTAAACTTCGCAAATTTTAATATATTTTTGACTTAT
TTATAATATATGTATATCATATTCTCTTATTTATTATTCAAAAATTTTATTTTTTTAATC
TTATTACAATCAAATTTCAATCATTATTTCAACTCTCCTTCAGAGAAGTCACAGTTTCCT
TCGCACTCACATCTGCTCATTTCTTTCGAACCACTTTCAAACTATTTCATTGCGATTGAC
GACTTGACACTGATTACGGCATCTCGGATTTGTTTGTAAAATTAATTACAACCTTGGGCC
AACCTAGTCCTGCGCCAACCTAGTCCTGCGCCAAACTAGTATTGGGCCAACCCAGTATTG
(1740 bp)

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