SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR9886c0_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_ubiquitin-protein_ligase_E3C_[Papilio_machaon]
Ontology
GO:0000209 P protein polyubiquitination
GO:0000502 C proteasome complex
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042787 P ubiquitin-dependent protein catabolic process
Transcript
Level		FPKM:5.04 TPM:4.93
ORF EntryO_TrvaFAMAMG10642_complete:A_TrvaFAMAMG_TR9886c0_g1_i1
Sequence
(Nucleotide)
CGTCTAGCCCCTTTTCGATAACGCGCGATAAGGAACTTCGTTCCAAAAACATGCGAATAT
TCGTGAATGTGATTGCGAATATTCGTCACATCCCTAATACCTACACCAACAATAAAACCG
ATACCGTTGTTTAAAATTATCCTATCCTCATTAACTTTAGGGATCAATCTCGGGATACAA
TTAACTCCAAAATGCGGCTCAATGTAGCTACAATATCTTATCAAGTAGGTACCTACCACA
TAAACATCCAATTCCGAAGTAGTCATTATAAATCTGTAACATATGTCTAAACAACGAGAA
AAATATATTTACATAACCAAATTTCATTCCAACACTGAAAATTTAAATGATATCATTTTC
AGTTCATAATAAATTTCATTTAACTTATTACCATAAATAGCGAAATTAAGTATTACTAGC
GAAAATATACAGAATATCACACTGAGGTATTATTATTTTGTTAAGTAAAAAATTGACAAG
TTCATTATGCATGTTCCCATATCATATTTTAACTGAGCTCGAATCCCGCGCCGGATTGTA
TCGCGTACAGCAACTTCTCAGCGAGTTGTTCTTCGGAAGGAAACTCCGGCAGCTTCAGCA
GGTTCATACAGGTCGACGACGACGGCAGGCGATCCGACGGACCGGCTGACTGGATGCAAA
ATGGAGGCTGAAGGTCCTTAAATCCTAATAACGGTGGCCTCGAACAACTCGTGACAAATT
TCAATAGTTGTCGCCTCTGATCGTCCGTGAGTTTCTCGACCACTTTCCAGAAACATTGCA
CGGTCGGATGAGTTTCAGAGAATCCTCCTGAGTAGAGCGTGTGCCGTTTGAGATCGTCGA
GGTCTATGGGCACCTCGGCGCCCGATATGAGGTGCTGCAGCTCGCGACACGAGAACATAC
GCAGCCAGTCCTCGTTCACCACGGACGACACGCCGCGCTTGAACGCGTTGCACTGAGATC
TTATTTGACGGTTTAACTTGTAATCAGCGACTAGATGAATATATTCTATCCTATTTTCAG
CGGTCACAGGAATGTTGGCACCACCGGGTTTTAATTCCTCTATCTTCTGTTCGCCTAGTT
CATCAGTAACTATGGTGAAGTCCAGTCCGAGGTCCGTGACGTCATGCCTGCGATGCGCCT
TGAGCAGCAGCAGGCCGCGGTAGAGCGCGGGGTCGAGCGACGCCAGCGCGTGCACGTCGG
GCTCGCGGGACGAACACAGCTTGGCGAGGAAGAACTCCGCTAGAGGCAGCTCCACTAGTA
AGTTCTCGTATAGGGCCTTTCCAAGCATTCTGCCAACAAAGTAATAGTGCATTGGGTAGT
CATCATACAACAAGGTCACACCGGGATTGGGATATAGCATGTTGTCTTTGGTCAATCGAA
ATAGACCTCGGTTTGGATCGAATGCTGATAATAGTAGTTCGGATAAGAATTCTCTGAATA
AACCACCACCATCGACACCAGCTTCTTCAGCTCCGGCTTGGTTGATCAACTGTACTCTTA
ACTTTAATTTCATATTCGGTTCATTATCTGGACTCAACTTGTCGAAAGCGTCTTCATACA
AATGCGTGCGTCTTACGCTTATATTTATAAAGGGTCCTTCGCTGAAATTCGTCATTTCAT
ACCAGTTGTCTTGCTTTTCCTTTGCTAGTAGAGACTGAAATATCAAGACTCTCGTAGAAA
ACGATACAACAAATGGTATTTCTTTGAGTATTGTAACTGTTCTTAATTCTTTAATTGTTA
ATGGAGGCCCCTCTTCTTGTGACAGATTGAGTTGTCTAAGATGGCTGGGGAAGGGCCTCG
AGCGGACGGCGTGCGTGGCGAGCGCCGCGCCCGTCGACTCCAGCACGTTGACTTCAGCCG
GCCACGCCGTCGCGTCGCAGAAATGCAGTCGCGAGTCGCGCGTGTACAGCGCACGCAGTA
GGTGCGTCACCACTTTGAACAGATGTGACCAGGTCGGCGTTCTGTTTTTCCCGGTGCTTA
ACTCCGTGTTTCCTGCAACCTGTCTGTACTGTCCGCACACCGTGACTCTTGACTCGGGGT
AGGCCAGCTCTATGAGGCCGAGACAGACTTGTCGCAGCGTTTTACACAGGCCGCCGAGCT
CGGAGAACTCAAACGCATGGACTCTTCCTCCGCCGCCTGAGCTTGGTAAGATCATTTTTT
CATCATCATCAATATCTCTGCAAAATTCTGTATCGTGTAACGTTCCAATTAACAGCGAGA
ACAGAGCGCAGAAGACAGCTAACGGCGCCAGCAATCTTTGTACATCTATTATAGATGTAT
CGGCACCCATGCCACGTGACAACGCAGAGAGGAGAGGAGTAGGAGATCCTCCAAACGAAG
ATACGTGATTCAAGTTACACATCCAACGCCATAGACCGCGCAGGAATATCGGTTTAAATG
CTAACGTGTATAGTAACCTGTATTTATGTAAAGCTAAACGATGACTCAACAGCAAATTAT
GACAGATTTCAGACATATACTCTAAGAATTCATCACTCAGATCATTATCAGTTATTTGTG
TGATTGTTTCCATTATACATCGATCCGGATCGTTTAGTAACTCTATACATCTCGTTAGTA
CAGTTTGTTCTCGAATGGAAATAGTATCAACTTCAGTTTCATCATCACTGTCGTCTTTGT
CAGCTGCTGTTTCTTGACTGTACAGTGAATCTTCGAATTCATACGAGATCTGTTTATTAC
ATACATTTTCAGTTAACCTAGCTATAACCTTAAGATATTCCGTAACTATACTGTTGTTCG
GCAGCCTTATGTTGTCCATGTTTTTCAAATCATTTGCAAATGTCTTAGGTTCTAAAACTA
AAACTGAATGCAGCAACCAAGAATCACTAACAATTTTTTTACTTAGGTATTTATCATCAT
CTTGTAGACATTTTATTAATGCCAAAAATGATATTGTTCTAGAAGATTCTTGAGCCAATG
ATGGTAAAATAAACATTTCCACTGGCTCAGGGTATGGATTACATAAAAATGCTGCTACAA
ACTCTGTTGTTACTGTATCCTCATAATAAGGAATGTTGACCCTCATAATTAATGATATTG
GCCTTTGTATTAATTCTAGTAGTGCTCCACTCAATGGTGTTGGTGGATTGGGCGATGGAC
CAAACATTGGCGGGGTCTTCTCACATAACAAGTTGCACAGATCTTTGAAATAGCCTCTTT
TTATCAAATACAGGAATGTATTGGCCACAAATCGTAATGCTTCATCACAGTTCATGGCCG
TTTCTACTGTGTTTATGGATGTAAATACTTCAAACATCCTTAGTGGAACTGCTATAGGCA
CTTCATTATTGTTCTTCAAAAGTCGCAAATGCAATGCAAGTAACCGTCTTATTTGTATAC
TTGCTCCACTATTATGGAAAACTTTTTTCCAATGTTTTAATAATAGTTGTGATATGGATA
CCAATCTGGAGACATCAGTTTTATCATTGTAAAAGAAAAATATTTTTGTTAAAAGAGCAG
ACAGTGTTACTTGATCCTCAATATTTATTCTGGGAAACATACTATCAAACTCATCCCTCT
CAACTTGTTTGCATCTTTGACGGATTAAGAAACTTCTGACAAAAGCTTGTATTTTTGTTA
CACTATTTAAACGCTTTCTGTGTTCCTCTCGTTTTTGTCTTTGCAGTTGTGTTTGTTGAA
TCAAAGAATCTCGATCAGTCTTTCTAGAAGCACTCGCACCAGCCAAATTTTGTTGCGGTT
TCCGTCTGAAGTCTCCCTCAAATGAATACATGATTTGAATATGATAATTCAAAAGTTTCT
CAGTTTGTGGTTCGTGTTTATTATTAGTTTGAAAGAGAACGGGTAATCGTACACAATGAC
TAGACTTTAATGTACAATTGCTAGTTAAGTAGTCTTATTATTTCAAGGAGCATTAACAAT
ATTCGAACGACATTCATCAAAATATTAAAGATGTTTTCAAGTTTTA
(3946 bp)

- SilkBase 1999-2023 -