SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR9855c0_g1_i4
Scaffold_id
NCBI non-redundant
(nr)		Retrovirus-related_Pol_polyprotein_from_transposon_412,_partial_[Stegodyphus_mimosarum]
Ontology
GO:0000166 F nucleotide binding
GO:0000943 C retrotransposon nucleocapsid
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0004540 F ribonuclease activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0019076 P viral release from host cell
GO:0032197 P transposition, RNA-mediated
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
Transcript
Level		FPKM:5.79 TPM:5.67
ORF EntryO_TrvaFAMAMG10310_complete:A_TrvaFAMAMG_TR9855c0_g1_i4
Sequence
(Nucleotide)
GGTTTACTGCTTTATTGTCTTCAACACTATTAGAAAACAGGCGTGAGAACTAAATTGGTT
TACTGCTTTATTGTCTTCATCATTCGCAACACTACCCTCTCTCTAAGACATGCTCGTCCC
GAGCATCATTAGACCCGTAGTAACGCGCCAGCCGATCCACGTGAACGATCTTAGGTGTGC
CCCGTTGTCCTTTCTGTATCCGGTATGTCAGGTCGTTGATCCTGGTCACCACACGATATG
GACCATCCCATTTGGCCTGTAGCTTCGGAGACTTCCCTTTGCTGCGTACTGGATTGTGAA
GCCATACCAGAGAGTTCTCGTGAAACCCGGGGTTGTTGAGTTTACGGTCGTATCGAGTTT
TCATCTTCTGTGATGCGTTCTGCCCGGATTCTCTGATGTGCTCGTAGATCTCGTTCATCT
TGACTCGAAGATCGCCGGCGTATTCCGTGATTGTTTGTGGTGAATCAGGTGGTATGCCAG
TTATCAGGTCAGCTGGTAGTCGCAGTTCTCGGCCAAAGTTTGCGAATGCTGGAGTCACAT
TAGTGCTCTCATGGACAGCACTACGATACGACAATAAAAATGGCTGGATGTGTTTATCCC
AATCTCGCTGCTTGCTTCCCACTACTTTAGCCAAGTATCTCTCCAGGGTTTGGTTAAATC
GCTCTACCATGCCGTCCGACTGCGGATGATACGACGTAGTTCGTGTTTTGTGAGCACCCA
TAACTCGACACGTCTCTTGGAACAACTGGGACTCAAAATTTCTCCCTTGGTCGCTGTGTA
TCTCCAAAGGCACTCCAAATCGGCAGAAGACTTCATGGACTAGTTTATCGGCAACTGTAG
AAGCTTCTTGGTTAGGAATCGCAAAAACTTCGGGCCACTTTGTGAAGTAATCCATGACAA
CCATGAAGTATTTGTTGCCACTTTCACTAACGGGAAATGGCCCTGCGATATCCAAGGCTA
TGCGCTCCCACGGTGCTCCGACGTTATATACTTTCAGTGCACCTCTGCTACGAGTATGAG
GGCCTTTCACTGCAGCACAGTTGGTACACTTTCTGACCCAATTTTCAACGTCGTCTCTGC
AGTTGATCCAGTAGAATCTCTCTCGTATCTTTAGCAGTGTTCTTTTCACTCCTAGATGTC
CTCCTGAGAATCCTTCATGGTACAGGTGTAGAACATCAGGTATCTTGGTTTTGGGGACTA
TCATTTGCAGATGAGAGCTGTTGCCTCGGGCGTTCTCCCATTTACGGCACAGAACCCCCT
CGTGGATCAGGAGACTCTCCCATTGAGCCCAGTAACTCTTCGTTGTAACACTCATGGTCG
AAACTTCACTCCAACTGGGCTTGGCGGCACCAGACTCGATCCATTCAAAAATCGGTTTTA
TGTCGACGTCTTCGTGCTGCGCCTTCTGAAGTGTATCTTTCCATTCGTCGCTAAGATCCG
TCCTGAGCATTCTGATTGGTACTGCCTCTTTATTCTCTTGCCGCAGACAGTGCTTGCAGT
CATCAGGGCATGGTCTCCTCGATAATGCATCCGCGTTGCCGTGCAGTCGTCCACTACGAT
GTTCCGTCGAAAAGTCAAACTCCTGTAGTTGTTCGATCCATCTTGCCACTTGTCCTTCAG
GATTCTTAAATTGAAGTAGCCACTTCAGTGCAGCGTGGTCAGTCCTTAGATGAAATCTTC
TTCCAAGTAGGTATTTACTGAAGTGTTGTAGTGTCTTTACTACTGCGAGCAGTTCTTTCC
TTGTCACACAGTAGTTTCGTTCCGGCTTGGATAGCGACTTGCTGAAGTAAGCTATCACAA
CTTCTTGTTCTCCTTTCCGTTGTGACAATACACCCCCGATACCAATGTTGCTTGCGTCGG
TATCCACGATGAACTCATTCTCTGTGTCTGGGAAGCCGAGGATCGGTGTTTCACATAGTC
GTCTTTTTAATTCCTTGAATGCACCATCGCAGTTTTCGTCCCAGCAGAAAAGTCGTTTCT
CCTCCGTGAGCTTATGCAATGGTTTAGCAATGTCGGCGAAACTCCTCACGAATCGTCGAT
AGTAAGAGCATAGTCCCAAAAATGCTCTAACTTCAGTCTTGTCTTTCGGTGTTGGCCACT
CCTTAACAGCGACGATTTTATCAGGATCGGTCTGCACACCCGCTTCCGAGACTACGTGTC
CCAGAAAACTCACTTGTCGCTTGAAGAACGAACACTTCTTTGAGCTTAGCTTGAGATTAG
CAGCTCGAATCTTTGACAACACGCGATCCAGGTTTTTAAGGTGGTCTTCGAAGGTCTTTC
CCACGATTATAATGTCATCCAGATACACGAGGCAGGCATCTCCAATCAGTCCAGCTAGTA
CGAGCTCCATAAGTCTTTCAAATGTGGCCGGAGCGTTACATAAACCGAAGGGCATCACTT
TGAATTGCCAGAGGCCCTTTCCAGTTGAAAATGCAGTCTTCTCTTTATCCTTAGGGTCGA
TTTCGACTTGCCAGTACCCACTTTTTAGGTCCAGGGTTGTAAACCATCTTATCCCTGTTA
GTGTATCCAAGGTATCGTCGATTCTCGGTAGTGGGTAACTGTCTTTCTTTGTTACGTCGT
TGAGTTTTCGATAATCCACGCAAAATCTCATGGTTCCATCCTTTTTCTTCACAAGCACCA
CTGGAGAACACCATGGGCTAGATGAAGGTTCAATCACACCGCTTTTCACCATTTCTTCCA
GCATGGCGTCAACTTCCTTTTCTCGGGCCACTGGTATTCTTCTAGGCCGCTGACGTATCG
GTGCCATGTCTCCAGTATTTATGGTGTGCTTCACTAATCCAGTTTTCCCAATGTTGTCGT
CACTTGAAGCGAAGATATCCGTGTAGCGTAACAGCAGTTTTTTCGCCATCAAGAGTTCTT
TGCCAGACAGATCTTTACGACAGTCCTTTAAGATTGCTGACACATCCCGATCACTCTGAA
GTTGGTCGCCGCTACGTGCTTCTTGACAGTTGCGCATCCAGTTGACTTCCTCACAAGTGC
CCATCAACGTGCCTCCCTTAATGAGGTGTTCTTCATCACTTGCGTTCAGTACACGCACTG
CTGTAGCTCCAGTAGTTTTCACTAAAGTCCGCGCCATCTTCCATGGTTGGTTGCTATCCA
CTTGCTCAATCAACACACATCGTCGCGGACTTCCAGGGTTTTCTGGTAGCTTCACAGCCA
CAATGGTTTCTGATCTCGGTGGCAGAACGGTTCGCTTCAGGCAATAGACACTCCCAGGTT
TCGCGCCTTCCATGAAGATCTCCTCTTTTCCGCATCTCAAGATCCCTTGGTTCACGTCGA
TCTCACAGTGATGTTCGCGCAGGAAGTCCAAGCCCAAAATGCAGTCGTCGACTATGTCGG
CCAAAATAACTTTGTGCTGGAAAGTTCTCTCACCCAGCTTCAGCATCACTGGTTTTTCCC
CTCGGACGGTTATGTGCTGGCCGGTTGCAGTGATGAGTCGAATAGTATTGCAGTTCCAGC
AATTTTGTTGAATTTTCTTGCCCAGTTGCGAACTAATCACTGTTCTTGATGCTCCAGTGT
CCAATGTGAGTTTACAAGGCACTCCGTTGATTTCTCCATTGATGATCAAGCTGTTCCCGT
CGTGAGCTTGTGAAATTGAAATCCGTGGGGCTCCATTAGAACCAGCCAGCACCCGCCCCT
TGGTTCTGGCTTTTATTCGTTTCCCTGCAGCTGGGTTGCACCATCGTGATCTTCCAAAGA
ACGCTCGTTTCTTCTGTTCAATGGTCTTGGGCAATTCCGTGCCATGTGTCCTTTTTTGAT
GGCAATTGTAGCATCTCCCACCAAACGGAGTAGACGTTTCTCTCAATTCTCTGATGCGTT
GAGAGTCTCTGCGGCTCGGTGGACACCGCACTGTTTCTACCTCTAAGGCGTGAGCTAGTG
CTTCTTTCAGCGTCTTGTGATGCGCTAGTTTGACCGCGGATCTTACTTCGTGGTCGTAAA
TCCCTCTGGCGAATGCGTTTACCAGCTCTTCTTCGTTGTACATTGGCGAAGACTGGTATG
CCTTGGAGAAGATCTTTTCTATTTCGAGAGCCCACTCTTGAAGGTTTTCATTTCTTTGTT
GGACTCGGTCATTCAGCTGTGCTCTGTAGACATGTTCCAGGTGGGCGTCTCCGTAACGAT
TTTCCAGCCTTTCAAGTAATTTCTCGTATGTCGCGTCCTTCCCAAGTGTTTCCAGTACAG
CGGCGGCCTGGCCACGTAGACTGACGGTGAGGGCAGTCATAGCTTGTTCGGCGCTCCATC
CATTCGCTTTGATGATGGCGTCAAGCTGGATTTTGTACGCCGTCCACGAAGAACTTCCAT
CAAACGGTGCTACCTTGAAGCTGTTGGATCCATTCGCTGTCACCGCCGTCACTCCTCCAG
ACTTGAGGACGTGCATCGTCCTTCTGACATCAGCAATGTTTGCTTCTGTTTCCACGATGC
GGCTCTCGTAGTTTTTTATCATAGTCGTATGATCTTCTATGATGCTTTCATGGCGTTCGA
GTCTGTCATTCACTTTCTTTAATTTTGTTTCCAAAGTTGCTTGTAAGTTTACTAGTAGCT
CTTCTTGTCTTCTAGCCGCTTCGTCTTGTTTTCGAGCCGCTTCTTCTTGTTTTCGAGCCG
TTTCTTCTTGTTTTCGAGCCGCTTCTTCTTGTTTGTCCATTTTCTCGTAAAGTTTTTGGA
ACATTGACATCATGTCGAATGTAGCAGGCGAAGCAGGTGCAGGTGCAGCAGGTACTCCAG
AGACGTTTTCCGAGTCGATGGGCGATGGCTCACTTACTTCGTCCAGCGAACGATTCCCGA
ATCGCCTCCGGTCCAGCTCTTCCTGGCGTCGCGTTTCTTCCAGACGTCGTTGACTCCGGG
TGCGGGCCAAGTCCTCGTCGTGCGGAGTTAATGGCATTTTTGCGTCTTTATCCCACTTCT
GACACCAAATGTTACGGGCTAGGGGTCGGGATAAAGACAAACAATGCACTCTCAATCTTA
ACTCGTTTATTTGTAATTACACACACAGTGTACTTACAAACTGATAGCAACACACAGTTA
CTTAGCACTAATGTTCGTTGTTGATCTTACTGTACCCGATGACAGACTGCCTTCTTGATG
GACCGCTCCGACATTTTATACTCCGAGCCTGGGAATTTAGAATATTCGAGTCGCTACGAA
AAAAGTTGTTTTTCTCCAAATAAATAGCGAAATGATTTTATTACGTGAGAACTAATTTTG
TCTATTGTTCCTCTACAAATAAACAGCGAAGCGTGAGAACCAATGTTGCATTGTCTATGT
CTCATTGTTTACCGGCTTTTTATTGCTTTACGACTATGCACAACACTATTAGAAAACAGG
CGTGAGAACTAAATTGGTTTACTGCTTTATTGTCTTCATCATTCGCAACAGTAATAATAG
TTTTACTCGTCGTATATAACCATCTGCTACCATGACCTTCAATATGTACCCTCACTAGGA
AATCACTCTGTGTAAGGAAAA
(5481 bp)

- SilkBase 1999-2023 -