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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR9823c0_g1_i5
Scaffold_id
NCBI non-redundant
(nr)		retroelement_polyprotein_[Lasius_niger]
Ontology
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005634 C nucleus
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
Transcript
Level		FPKM:3.32 TPM:3.25
ORF EntryO_TrvaFAMAMG10013_complete:A_TrvaFAMAMG_TR9823c0_g1_i5
Sequence
(Nucleotide)
TACCATGACCTTCAATATGTACCCTCACTAGGAAATCACCCTGTATGTATATCGCGTGAC
AATGCAGTGATATAATAAAATATTGTGTTGCGCCTACATAATAACCCTTAATACTGTTAT
AAAGTAAAAATTAAGCTCAAAAACATGTATGCCTTGCCAAGATTTTCTTGTATATTTCCA
TGATACAAAAAGATAATCGACCCGTCCTATCGTCTGCCAGTGCAATATAAAATATAGTAG
CGGCAATATAAAAAACCTGCAGCCAAAAGCAGACCTTAGAATATTATGCCACCATTTCAG
GAAACCTAGCTTAAGTGTATTTGTTGAGTATGAACATCTAGATAAGACAATAGATTGTAC
TTCGATTGCAAGAGGCAAAATAAAACTTCAATTTGCTTCTCTGAAAATAAAGTATGAAAT
TTTATTTATAGAGTAGGTGACACAGTCATAAAATGTAATTTTTACAAACACAATCTCATC
TGAAAATAAAGAAACGACAATAAAAGTTTATTGCTATCACCTCTCGTTTATATCATCTAA
CAAACTTTACAAATTAATCTTTAAATAAACTAAAATTATTATAATTAAATTATCTTATCA
TATTGCTATTTTTACATTTGACATTGACAGCCCGATCGACGCGACACGACGCGACTCTCT
CTGGAACTAACAATGCGCGCGCATAATTAAGTTGAAGAGATAATTCTCTTTACATCTCCC
TCCTTGGGGGTGAGAATTACTCCAGTAATTCTCATTGTAGCTGTACCATTATTCAGCGTT
ATCCATCATTTATTCCATCTTCCATTCGAATAAGCTTTGTTATATGGTATAAGCTTGTAT
TCTTTTTTGTTCTGCCTGTGTTTATTTTGTATATTGTATTTGATATTTTTTCTGTAATTT
CAAATGGACCGATTCTTAAATTATCCAATTTTTTTCTATTTAATTTATTCCCGTTTTCAA
TATATACTAGATCTCCTATGTTAAATTCACATTGTAGTCTGCCTTTATCAAATAATTTCT
TATTATATGTATGTGATTTAATTGATCTTTCTAGTGCTTGTTGTCTGTCTTTAATCCAAA
TTTCTGTATCTGTTGGTTGTCGTAATTCTTGTGGCAAGATGCTTGTGGCTTTTCCTTCTA
ATAAATACACCGGTGCAAAGCCTGTTACCGTGTGCTCTAATTCATTGTACTTATCTACAC
ATTCTCTTGCAATTGACGTCCAGGATTTCTTCTCTTTTTTTTCATTTATTTTGCACCTCA
TTTTGTTAACTAGAGTCTGGTTTAATCTTTCATTGAGTCCGTTTGAAAACGGAGTATCAA
CTGCAGTAAATATTAGTTTTACATCATTATCTGTCAAAAATTCTTTAAATTCTTTTGAAT
TTATCCCTGGATACTGATCTGATAGTAATATCTCAATTTTTTCCGTATCCAGAACTTTTT
TTACCAATTTAATGAAATCGGCAGCATTTTGCGTTTTTGATGTCAGAATGAACGCAAATC
TTGTATAATGATCAACCAACAAATGTAAATATCTTTTTGTTGATCGTTGTCCTCCAAAGC
CACCGATGGTATCTATCGACATTATCTGAAATGGTTTTGATGCTGGTCCTAGATGTGACA
TCAGTCCGTATTGAATTCGGCCTCTTGATTTGTTTTTCAAGCATACTTCACAATGCTTAC
ATATTTGTTTTATGTTTCTCGTTAGGTTCTTCGCTGTATAATAAGGACTGATTTTTTTAA
TCATTTGATTTATCCCTAAATGGCACCATTCGGTATGTATTTCCTTTACTAGTCTTAGTC
CTGCTTCTTCAGATAGTATATTTTTTTCTCTATTGCGATTTTTTTTTGTATAATATCCCA
TTTCTTTCGGTTATTTTGATTTTCTTTTGGTTTATTTTCTCATTTCTTTTCTGATCAGTT
TTAATATCATCTAATGTTATCAGATTCACCGTTTTCAAAATTTCTTCATCATTACTATTA
TCCTCCAATACTGGGTTCCTACTGAGACTATCTGCTTCAGTATTTATTTTTCCCGGAATA
TATTTAATGTTGAAGTCATATTGGGACAAATAAAAAGTCAGTTCGCCAAGTTCATCATCT
GTTCTAGCCCTTATGTTGAGGTTTTCTAGTGGTTTGTGATCCGAATAAACGGTGAATTTT
CTTCCTATCAGCCAAAATTGCCAGTATTTGATAGCTTCTTTGATTGCTAAGCATTCAAGG
TATATTGCCTTCTTTCTCTTTTGTGTGTCATTAAGTTTCTTTGAAAAATAGCCAACTGGT
TTTTCTTTTCCATCTTTTTGAATCTGTTTTAATATTGCACCTATACCATTCAACGAGGCA
TCCGTGTATATATTAATAGGCAGGTCTTTATCAAATATTTCCAGTACTGGCTGTGAGCAT
AATATATTTTTTATATCAGTGAAAGATTTTTCACATTCTTCAGACCATATAAATTGAGCA
TTTTTTCTTAATAACCTATGCAATGGATCCAATAATATTGAACTATTTGGTACATATTCG
TGGTAAAAGTTGATCTTCCCTAGAAATTGA
(2550 bp)

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