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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR9823c0_g1_i4
Scaffold_id
NCBI non-redundant
(nr)		retroelement_polyprotein_[Lasius_niger]
Ontology
GO:0000166 F nucleotide binding
GO:0000943 C retrotransposon nucleocapsid
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0004540 F ribonuclease activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0019076 P viral release from host cell
GO:0032197 P transposition, RNA-mediated
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
Transcript
Level		FPKM:1.19 TPM:1.16
ORF EntryO_TrvaFAMAMG10007_5prime_partial:A_TrvaFAMAMG_TR9823c0_g1_i4
Sequence
(Nucleotide)
CAAGTTATTATTTCTTAATATATTTGATAAAATTCTTTGGAAGATGGCAGGTGATGTTTT
CAGTCCAAATGGTAGACAGGTCCATTGATAATGTCCATCCTGTGTGACGAATCCTGTCTT
TTGCCTGTCCTCAACACGTAGTGGTATGGACCAAAACGCGGAATTTATGTCCAATGTGGT
AAAATATTTACAATTTCTTGCTTTAATTATCAAGTCGCTTATCAATGGGAATGGCTGTGC
TTGTGGTATGACTATTTTGTTTAGTTCACGAAAATCAATACAAAGTCTCGATTTTGTATT
TTCGTCTCTTTTAAATGCCAAGGTAACTGGTGCAGCAAAGGGGCTGTATGATTCCTCAAT
TAAGTTATTTTTTAGTAAATTAGCTACCTGTTTTTCTATTTCCATTTTGTCTTCTATTGT
GCAACGATAAGGTCTTTTGCTGCAGTACTTATCTACCAGTAAGTCTATCCGGGCTTCATA
TTCTGTAACAGTACCTACATCATATTTGTCTTTGGCAAATACAGTATTATAATTATCTAT
TAAATTTTGTATTTGAGTTTTTTTCACATTGTCTAAGTGATGTAGATTTGTTATAAAGTC
GTTTTTACTAACATGCTCGTTAAAATTGATTTTAATTGTTTCTATCTCTTCTAATAAATT
CATTGTATCTATCTTCCTCTTTGTCTTTTGTTGTATTTTTAGATCTTCATCTTGAGCTAA
TTTAATTTTTTTTATCATATCTAGTCCTATAATGAAATCTTCAAAATCTAGTTTGTCTAT
AATAAAAACATCAACATATTCTTCTATATCAAAAATCTTTACTTTTATTCTTATTAAACC
TTTTGTGTATGTCACACCATTGACCGTTCTTAATAATATTCTATTTTTATCCTCTGAATC
ATTCTGTATTTTAACTAATCTTTTGTTTATTAGAGAGACTTGTGAGCCTGAATCATATGT
TCCATTTATTTGTATTTTGTCTTCTAATAACATATTAATTTTTATCAATGGTGTGATTAT
TCGTTTTTTGTGTCTTCGCTTAGATTCACTTCTATAACCGAATTACTTCCAATCCTTTTT
TTTTCTATCCCTTCTTTTTTAAACCAACATGACTGTTCTGGGTGGTATCGAGTGCCCTTA
CTCAAGTTCTGACAGATTTGGCATGGCTTTTTGTCTGCAATGTATTTTTTGTCATCTTTT
TCTTCTCTCTTTTTTATGAAGCTTTTATTATTTACTAAACTTTCACACTTACTTATTTCA
TGAAGCAATCTCGTTGAGGATTCACACTTTTCAGGATCAATCTTGTTTCTAATAAATTCT
GGTAAGCCGGCTGCTATAAGTGTCACCAGACTTTTCCCACTTATATTTTCGTCCATATCT
AGTAATATTTTTTCCTTTCTTATGGCATAATCCATTAATGTTCCTTCCTTATATTTATAA
AATATGGCATACATTGCCGTACTCCATCCTTTATCAGCAAATGTATCTAAAAATTTATTT
TTCCACTCAGACCATCCAGCCTCGATTTTCAAAGTCCTCAATGTTGCAGAGTGCCAATCT
GCACCTGTTTTATCCAAAAATAATCTTAATATTTCTATTTTTGTTGTGTCTCTCTGAATT
TCAAATCTTTTACATTCTATCTCAAATGTTTCGATCCACTGCTTCGCATTCGAGAATTTA
CATACAAATTTTTCAATCATAAATCTTTCTGATATATTTTTCAAATTGAGTTGACCCTCG
TTTTGCTGTTTGGATCCTACGAAATCTGTTTCTTTTCCTTCATTTAGATATAAGTCGTTA
AACATTAAATTATCATCCTCATCAAAATAGGCTTTTATCATTTCTTCTGTACATGTAATC
CATATTGTTCTTTCTTGACCTCTTTGATTTAAACTCTTTTTTATTCTTTTATAGGTTTCT
GTTTTAGTTAGTGCTATATGGCGACTCGCGTATCTATCAGTTTCAGACAATATATACTTT
TTGTTATCCTGTGTTGTAATTGAAGTTATGGCAATCACGCTCGTCTTATTGTCAGTTTGT
GATGCTTCAAGTTTAAATGCAAACTGCAATTTTTGTGCCATTATAAACAAGTATTGTCGT
TTTATAAGACAATAGATAGCAAGAGGCAAAATTAAACTTCAATTTGTTTCTCTGAAAATA
GAGTATGAAATTTTATTTACAGAGTCATAAAAATGCATAGTCATAAAATATAATCTTTAC
GTTTCTAAAACAAACTCACCTGAAAATAGAGAAACGACAATAAAAGTTTATTGCTATCAC
CTCTCGTTTATATCATCTAACAAACTTTACAAATTAATCTTTAAATAAACTAAAATTATT
ATAATTAAATTATCTTATCATATTGCTATTTTTACATTTGACATTGACAGCCCGATCGAC
GCGACACGACGCGACTCTCTCTGGAACTAACAATGCGCGCGCATAATTAAGTTGAAGAGA
TAATTCTCTTTACATCTCCCTCCTTGGGGGTGAGAATTACTCCAGTAATTCTCATTGTAG
CTGTACCATTATTCAGCGTTATCCATCATTTATTCCATCTTCCATTCGAATAAGCTTTGT
TATATGGTATAAGCTTGTATTCTTTTTTGTTCTGCCTGTGTTTATTTTGTATATTGTATT
TGATATTTTTTCTGTAATTTCAAATGGACCGATTCTTAAATTATCCAATTTTTTTCTATT
TAATTTATTCCCGTTTTCAATATATACTAGATCTCCTATGTTAAATTCACATTGTAGTCT
GCCTTTATCAAATAATTTCTTATTATATGTATGTGATTTAATTGATCTTTCTAGTGCTTG
TTGTCTGTCTTTAATCCAAATTTCTGTATCTGTTGGTTGTCGTAATTCTTGTGGCAAGAT
GCTTGTGGCTTTTCCTTCTAATAAATACACCGGTGCAAAGCCTGTTACCGTGTGCTCTAA
TTCATTGTACTTATCTACACATTCTCTTGCAATTGACGTCCAGGATTTCTTCTCTTTTTT
TTCATTTATTTTGCACCTCATTTTGTTAACTAGAGTCTGGTTTAATCTTTCATTGAGTCC
GTTTGAAAACGGAGTATCAACTGCAGTAAATATTAGTTTTACATCATTATCTGTCAAAAA
TTCTTTAAATTCTTTTGAATTTATCCCTGGATACTGATCTGATAGTAATATCTCAATTTT
TTCCGTATCCAGAACTTTTTTTACCAATTTAATGAAATCGGCAGCATTTTGCGTTTTTGA
TGTCAGAATGAACGCAAATCTTGTATAATGATCAACCAACAAATGTAAATATCTTTTTGT
TGATCGTTGTCCTCCAAAGCCACCGATGGTATCTATCGACATTATCTGAAATGGTTTTGA
TGCTGGTCCTAGATGTGACATCAGTCCGTATTGAATTCGGCCTCTTGATTTGTTTTTCAA
GCATACTTCACAATGCTTACATATTTGTTTTATGTTTCTCGTTAGGTTCTTCGCTGTATA
ATAAGGACTGATTTTTTTTAATCATTTGATTTATCCCTAAATGGCACCATTCGGTATGTA
TTTCCTTTACTAGTCTTAGTCCTGCTTCTTCAGATAGTATATTTTTTTCTCTATTGCGAT
TTTTTTTGTATAATATCCCATTTCTTTCGGTTATTTTGATTTTCTTTTGGTTTATTTTCT
CATTTCTTTTCTGATCAGTTTTAATATCATCTAATGTTATCAGATTCACCGTTTTCAAAA
TTTCTTCATCATTACTATTATCCTCCAATACTGGGTTCCTACTGAGACTATCTGCTTCAG
TATTTATTTTTCCCGGAATATATTTAATGTTGAAGTCATATTGGGACAAATAAAAAGTCA
GTTCGCCAAGTTCATCATCTGTTCTAGCCCTTATGTTGAGGTTTTCTAGTGGTTTGTGAT
CCGAATAAACGGTGAATTTTCTTCCTATCAGCCAAAATTGCCAGTATTTGATAGCTTCTT
TGATTGCTAAGCATTCAAGGTATATTGCCTTCTTTCTCTTTTGTGTGTCATTAAGTTTCT
TTGAAAAATAGCCAACTGGTTTTTCTTTTCCATCTTTTTGAATCTGTTTTAATATTGCAC
CTATACCATTCAACGAGGCATCCGTGTATATATTAATAGGCAGGTCTTTATCAAATATTT
CCAGTACTGGCTGTGAGCATAATATATTTTTTATATCAGTGAAAGATTTTTCACATTCTT
CAGACCATATAAATTGAGCATTTTTTCTTAATAACCTATGCAATGGATCCAATAATATTG
AACTATTTGGTACATATTCGTGGTAAAAGTTGATCTTCCCTAGAAATTGACGAATATTCT
TTTGGGTCTTTGGCGTTGGAAAATTCCTTATTGAAATAATGTTATCTTTGAGTGGTTTTA
CCGTATTATTTCCTATTATATGTCCTAAGTATTTTACTGAAGTTGCTGCAAACGTGCATT
TTGTAAATTTTAGTCTGAATCCTTCCTTTATTATTGCTTTAAGTACTTTTTCTATGTGTT
CAATATGTTCT
(4511 bp)

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