SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR52c0_g1_i2
Scaffold_id
NCBI non-redundant
(nr)		Ubiquitin_carboxyl-terminal_hydrolase_1_[Papilio_xuthus]
Ontology
GO:0004843 F thiol-dependent deubiquitinase
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006282 P regulation of DNA repair
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0009411 P response to UV
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0035520 P monoubiquitinated protein deubiquitination
GO:0036459 F thiol-dependent deubiquitinase
Transcript
Level		FPKM:9.98 TPM:9.78
ORF EntryO_TrvaFAMAMG143_complete:A_TrvaFAMAMG_TR52c0_g1_i2
Sequence
(Nucleotide)
CCGATCCCTACCGGATCCCCATCGGATCTTCGTCGTTTATTTTAGCAAATTTTAAGAAAT
AACAGAGTAATTATTAAACAAGATAACGTTGCCTTACAGTATAATGTAAGTCAATGAACG
TAATAAATATTTTCGCGTGCGCTGAAGATGCCATTTAATTTAGTGACTGAAACGAAAAAA
GGTGTCGATAAACCAAGATTCTCCCTATCGCTGAGCAGAAATAATGTGCCACATTTGAGC
AACGAAAACAAGAAAAATAACGAAAATACAGACCCATGCATTACTGGTAATAACAAGGAG
AACAAGCCATTAAAAAGGCCGCTCAGAAGTGTATACTCCAACACCTTAAGTGCTGCGAAA
AAATTAAAACCCTTGACGGAATCAACAATATCTGGAGGTCCCCCTATAAATAGGGACAAA
CCCAAACTCGCAGACAGGACATTCGACAAGGAACTGGTAATACTGGAGGAGGCGGAGTCA
AGCTCGGTCATGTTGAATGGCCACCACCCGCCTGACAGTCAATATGGAGGGTCACAGAAG
AAGGTGCCTGTGTCATCGCTCTCCAACTTAGGGAATACGTGTTTTCTTAACAGTGTTCTT
TATACGTTGCGATATGCACCCCGATTCCTACACAATCTCCATCACCTCGTATCGGACCTG
GCAAGTGTTGAGCAGAAGCTGGGCAGCATCAGACTCAAGAGCTCATCCCTGGGCCGTAGT
GCTGCAGGATTGGTCTCGTCCGGAACTCGGTCCTGGAGCAGCAAAGACTTACTCTCATTA
GGACAGTCAGATAATAACGCAGGGAAAAGTAAAATACAGATAGCAACAGAGAAACTACAC
GAAACATACTTCAATCTACGCGCGGCCGAGAACAAATGTATTAACAGCACCAATCCCGAA
GCTGCGCCCGAACCCTACGCCGCTGACGCATTCTTGGCGGCTCTAAGAGATGTCAATTCT
ACTTTTGAAGGTAATCGACAACAAGACGCCCACGAGTTGTTAGTTTGTATATTGGACAAC
ATACGAGAGACTTGCAGAGCGCTGAGTGCCCGCGCCGCTAGATTACAGATACACGAGAAT
GGTGACAGTAACGGTATAGGCCGCCAGCCCAGTTTGGACGGGGACAACGGTAAACCAACA
TTAGGCAATATTCGTAAATCATGGAAGAAACGCAAAGAAATCAAAGCTAACAATGACAAG
AGGAACTCTCCCACTGAGGAAAGAGAACCCTCACCCGTTGACACTGAAAAAGATGAACGT
TCGAGGCCTGGATTCGATTTTGTTGCTGAAGATTTTGAAGGTACAATGGTGGTCCGAACG
ATGTGTCTTGAATGTGAAGCGGTGACTCAGAAAGCGCAGGCCGTCTGTGAACTGTGCGTG
CCCGTCGGGGAGGACGAACCCGCCTCCGAACCCTTCAGAGCCGCCTGCCTTTCTACTGAA
TATCTACGCGATCAGAACAAGTACTGGTGCGAACGTTGCCTGCGGTACAACGAGGCCCGT
CGAAGCGTCACGTACTCGAGGCTGCCGCGACTTCTCGTGCTCCAACTGAAGAGATTCAGC
GGAGGAATGGAGAAGATCACGAGACACGCGCCCACTCCTCTACTCATGCCCTGCTTCTGT
GAGCCCTGCGCGTCTAGACCGCCGGAACACGCTCCACAACACAGATACATATTATGGGCA
GTGATAATGCACCTCGGTCAGACATTGACCGGGGGACACTACGTTGCCTACGCCCGGGAT
ACCTCGTGCGACTTCAAATGTTCCCGCGAAGGAAGTGGGGACGCTACCACATCGTCATCT
TCATTCATGAGAACCCTCTTCAACAGACCTCGACATCCACCAACCGGGTGCGCGGCCAAA
GAATGCTGCGTCCCCCGACCTAGGACTGAACCCTGCTGGTTGGCTTGTGACGATGAACTC
GTTAAACCTATTTCGAACGAGGAATTCGAAGACTTGTTGTCAGCTGAACCGAAGATGCGT
TCGGCGGCGACACCTTACCTCCTGTTCTACGTTAAAAGTGAAGTTGGCTAGTGCTTGTCA
GTGTTGGTTGTGGTTGTTAAATGGTACGGAGCACTCTGGATTTGAAACGACAATAAGCAA
ATTTTGTAATATGAGTCAGTGGCGTGCATATACTTAAATCAGGGTATGCGAGTATTACAT
ACGTTTAATTTATTAGTTTTTGATCTATTCAAGTCATTTTTCAGATTAAAATCACTTTTG
TATAATTTTTAAACGCAACTTCATTTTTATGGTATGCAGCGCTTATTTGCATCTATAAAC
TGCACGCCACTGATTAAAATTCAGTATTTTTATAAATTTCATTGATCAGTTGAACCGGCT
CCAAATCCATGATTAAAATACTACTATTGTGAGATCCTATGAAATTAGCCGAAATAATCA
CATACCTCGCAAAATTTTCACATACTTGAAAATGGTCCAAATTTGGATACTATGATTATT
GCCGCATAAAAGACACCAGTAAAGGCATAAATTATTCTTATGTTTGCCTGAAGTGATATT
ACGAATGTAGCAACAAAATATTATTACTTAGGTATATAGAAAGTTTTATGACAAAAGCTA
TGTAATGAAAACAGATTTTAATTAATATCTATTTTAAAAACATGATTACTGGGTTGGGTA
GCTAAATACTACTGACAAATCTTTATTTAATTTTGTTAATTAATAGTTTACAAACATACA
GATTTTTGTGATAGTTTTAAGCAAAATTTCAATATTCTATGAATGGCCTAACTTATTAAA
TTATAAAACATTTTACTTATAGCTCTTGGTTCAGATTACTAAAGAAATATCAGTATGACA
TTGAAATCAGTAAAAGAGTAAATATTTACGAAAATACATAAAATTCTTGCCAACTGTTTG
TAACCCCTGATCCCTTTTTCATACGCACAAAATATGCATGAAATTTTCTACATAACTTTA
CATTATTTAAACTATATTCCTAAAAAAACATTATTTATTTAATTTTTAATTTGTATTAAT
CTTATAAAAATGGTAACAAGATAACAAAATTGTAAGTGCCTAATACTTTACGTTCATATT
GCATCACTATATTTAAACGGCACAAACTTAGTCCTAAAATCATAATTGAAAATGTACACA
CTAGTATTAATATTCACTATGTAAATTGTATTAAAAGTATTGTAAATTTACTGATGATTT
ATTTACTTTTTATAAACATATTTAACGTGTAACTTATGTTGTGTGAGAGTGTAAGAATGT
CTTCTATATGTGAAGTAGGTTAAATATATGAAACAGCAATACATACGTTTTACAAAGCTC
TAAGCTGTTTTGGTAATGCTTATAAGTTTTGAAACTTGCAGTGTGTACTTTCAATGAGAT
ACCTAGAGTCTTGGATAATTTTGATCTATAATAAAACTAAATATACAAAATTGCTAAGTA
GTTGTCTATTTATAGATTGTTTTACGTAAACATGGACCACATTGCTTTCTGTGCTACTTT
TGTCAATTTTGTAAAGCTCAAACTATTTTCTATGTCGATATTTCAACTATGAAAATGCTC
ACGTGAAATCTAGAAACAAACCATCATTGTCTAATTTTGGTCATACTTGTGTAAATACAA
TTTTAAATAGCCAAGATTTAAATCAGATGATTCTAATAAATTTGACTTTTTTTTCAGTTT
CTTAGAATACCTACTATATTAGAAGTCCAAGTATTTACATGATACAAATATATACTTTTG
GGAATGTAAAAATTTTACCTTTTCTTATTTTATTTTGCGTATGCCATTCCAAAACCTTTG
TAAAAGGTGAAAAATTCTTGTCAGTAGCTATATTTGACCTTTTTTTTATGAAATCAAAAA
ATATTATAATAATTAATATTATCGTTCATTTTTAATGTAAATTGAATTGGATAATAAAAT
CAG
(3903 bp)

- SilkBase 1999-2023 -