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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR48c0_g2_i1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_RNA_polymerase_II_transcription_factor_B_subunit_2_isoform_X2_[Papilio_polytes]
Ontology
GO:0000439 C transcription factor TFIIH core complex
GO:0003690 F double-stranded DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0004003 F DNA helicase activity
GO:0004672 F protein kinase activity
GO:0005634 C nucleus
GO:0005675 C transcription factor TFIIH holo complex
GO:0006281 P DNA repair
GO:0006289 P nucleotide-excision repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006974 P cellular response to DNA damage stimulus
GO:0008094 F ATP-dependent activity, acting on DNA
GO:0008353 F RNA polymerase II CTD heptapeptide repeat kinase activity
GO:0032508 P DNA duplex unwinding
GO:0070816 P phosphorylation of RNA polymerase II C-terminal domain
Transcript
Level		FPKM:3.03 TPM:2.96
ORF EntryO_TrvaFAMAMG136_complete:A_TrvaFAMAMG_TR48c0_g2_i1
Sequence
(Nucleotide)
TTTCAAACTTGTACTAAAATATTTATTTACAAAGTATATTTACAATCTATTTATAACAAA
ATCACTTACCATTAAATTCAATTTCATACATATTTTGGCAAATTTCTAAACTGGTACACA
CATTTTAATAGCAAATTGTCTTAATTGATCTCTTCGGTAGATTTAGATATTGATATTTAT
TGCTCAACATAAATTTAATACCAATAAAACTTGACAGTTACCACCGAACTCGGCCAATAC
GAGTTCAACGGCATGCCATGTGGCTTGAAGAGTGCTCCGGTTGTTACAGTACTATGCATT
CTTAGAGTATCGTTTCCAGAACTTCTTGACGTCGTCGTGTCCTGCGCGCGTCACCACCAT
GGTTCTCGTTCGCTCGTTCTGCCAGCTCAGCACGCCGGCCGCGCGCGCGTGATCACGTAG
TACTACGAAATCCGCCTGTGAAAGGAATTGATTGTAAACAACGCCCTCCGTGTAAGTACA
TCTGTTCCTCTCGGACTCCCACAGCCGGATCTGATCCACCACGGTGGGAGGGAGTACTGA
CGACGATCTGATGCCGCCCGACTCCGACTTCAACATCTGTGGATGCGAGTGTTGTTCTAG
ATAGTGTATGATCTGTTGCGCCGTGATGCCGCCGCGTAGCGCCTGACGCACCGACTCACG
ACTCACTACACCTACTACCAGGTTTGGAAACCTGTATATGAGTTGCGTGAAGAGGCCGAG
CAGCGCCACCTGCAGGTCGGAGGAGGTGTAGGCGTACACGCGGTAGTTGGTCTCCAGCAC
GAGGTGCGCGGCTTGGCGGGACGCGCTCGTGATCTGCGCGGCGGGACCACTCGCGCCCAC
CATGTGCAGGGCCAGGCGCGTCGGGTAGAAACGACCCGCCTTGCTCTACAACCACATTGT
CGGTGCAGTGTCGGTGCAGTGTCGGTACAGTGTCGGTACAGTACGGCACGAGGTGCGCGG
CTTGGCGGGACGCGCTCGTGATCTGCGCGGCGGGACCACTCGCGCCCACCATGTGCAGGG
CCAGGCGCGTCGGGTAGAAACGACCCGCCTTGCGCTTTCTCTGGTAGACGAGTCCAAACT
CTCTGAGATGTTGCAAGAACACAAGCATGTTATTACTCATGCCTTCTGTACTGTAATCCT
TTCCCAGCGTACTGAAGCTGAGTTGATATAGGAAGGCCAGACACTCGGCTGCGCTGAGGC
TTCGTTTCTCTGCTGTGTGCAGGTAATGTTGAAGGAATAACCACACCTGTTTAGGAGTAC
TTAGTAGTAGGAACTGGAAGCCCGCACGAGTTATAACTGCTGAACCATCTTCTGCATCTC
TGGTCATCAAGCCAGCATGCAGCAATATCCTGACAGCATCAGCGCTGATCCCCTCGGTCT
GTGCGCTGCCCACCATGTAGTGCAGCACACACTCCCAGCGCTCCAGGGCATACGCGTCTA
GGAACGCCACGTCACGAGCCTTGCCGTCTGGCTCTAGGGACGAGGACATGCTCCATGGAC
GACCACCTCCCAGTAAAGCCACTTTCAGGTTCTTCTTAAAGGACTGAGATAGCATCCAGC
CCGGCATTCCACCAGGTATGGGAGCCTCCTGCCACACCGATAGCTCTGATAATGCTGTGC
ATGCTTTGGCTTGCTCTTTGGCATATGTCTGTGAGACCCAGGATGTCACGACGGCCTGTG
GTACGGGCTGCTCCACAAACAGCAGACGGATCACAAAGTGACGGGCTAACTCTGGTAGTT
CCCGGTATATTGCGAGGCATATCGTTGGATAATTGTACAGAGTCTCCAAAAATTGAGGAG
ATCTAGACTTCAGGTACTCGTGAAGATCTTTACAGTGTAATGTCGGTGATGGATTCAAAT
GTAAAGACTTGGATTTAGATGATTCTGACATGTTTTATGATTTTATTAATTGACTGATTG
CAAAATATTATACGTCACAAGTAATTACTAATTACAATTTTTTTTCATTTCTCAGCATCA
CGAAACAAAACATTTCGTAAACAACAGCGACTGA
(2014 bp)

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